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** DONE defunct R sessions
turns out I just had to use inferior-ess-send-input instead of comint-send-input
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@ -111,7 +111,7 @@ last statement in BODY."
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tmp-file))
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(full-body (mapconcat #'org-babel-chomp (list body last-value-eval org-babel-R-eoe-indicator) "\n"))
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(raw (org-babel-comint-with-output buffer org-babel-R-eoe-output nil
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(insert full-body) (comint-send-input)))
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(insert full-body) (inferior-ess-send-input)))
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(results (let ((broke nil))
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(delete nil (mapcar (lambda (el)
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(if (or broke
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104
org-babel.org
104
org-babel.org
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@ -1718,16 +1718,11 @@ This could probably be added to [[file:lisp/org-babel-script.el][org-babel-scrip
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(see [[* file result types][file result types]])
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* Bugs [13/18]
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** TODO defunct R sessions
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Sometimes an old R session will turn defunct, and newly inserted code
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will not be evaluated (leading to a hang).
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* Bugs [14/18]
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** TODO test failing forcing vector results with =test-forced-vector-results= ruby code block
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Note that this only seems to happen the *second* time the test table
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is evaluated
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#+srcname: bug-trivial-vector
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#+begin_src emacs-lisp :results vector silent
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8
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@ -1769,6 +1764,11 @@ even a third"
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E.g. the pie chart example. Despite the save-window-excursion in
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org-babel-execute:R. (I never learned how to do this properly: org-R
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jumps all over the place...)
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** DONE defunct R sessions
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Sometimes an old R session will turn defunct, and newly inserted code
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will not be evaluated (leading to a hang).
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This seems to be fixed by using `inferior-ess-send-input' rather than `comint-send-input'.
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** DONE ruby fails on first call to non-default session
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#+srcname: bug-new-session
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@ -2035,52 +2035,52 @@ org-babel functionality.
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of these tests may fail.
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#+TBLNAME: org-babel-tests
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| functionality | block | arg | expected | results | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+--------------------------------|
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| basic evaluation | | | | | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+--------------------------------|
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| emacs lisp | basic-elisp | | 5 | 5 | pass |
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| shell | basic-shell | | 6 | 6 | pass |
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| ruby | basic-ruby | | org-babel | org-babel | pass |
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| python | basic-python | | hello world | hello world | pass |
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| R | basic-R | | 13 | 13 | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+--------------------------------|
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| tables | | | | | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+--------------------------------|
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| emacs lisp | table-elisp | | 3 | 3 | pass |
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| ruby | table-ruby | | 1-2-3 | 1-2-3 | pass |
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| python | table-python | | 5 | 5 | pass |
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| R | table-R | | 3.5 | 3.5 | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+--------------------------------|
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| source block references | | | | | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+--------------------------------|
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| all languages | chained-ref-last | | Array | Array | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+--------------------------------|
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| source block functions | | | | | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+--------------------------------|
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| emacs lisp | defun-fibb | | fibbd | fibbd | pass |
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| run over | Fibonacci | 0 | 1 | 1 | pass |
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| a | Fibonacci | 1 | 1 | 1 | pass |
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| variety | Fibonacci | 2 | 2 | 2 | pass |
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| of | Fibonacci | 3 | 3 | 3 | pass |
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| different | Fibonacci | 4 | 5 | 5 | pass |
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| arguments | Fibonacci | 5 | 8 | 8 | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+--------------------------------|
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| bugs and tasks | | | | | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+--------------------------------|
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| simple ruby arrays | ruby-array-test | | 3 | 3 | pass |
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| R number evaluation | bug-R-number-evaluation | | 2 | 2 | pass |
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| multi-line ruby blocks | multi-line-ruby-test | | 2 | 2 | pass |
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| forcing vector results | test-forced-vector-results | | Array | nil | expected "Array" but was "nil" |
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|-------------------------+----------------------------+-----+-------------+-------------+--------------------------------|
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| sessions | | | | | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+--------------------------------|
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| set ruby session | set-ruby-session-var | | :set | :set | pass |
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| get from ruby session | get-ruby-session-var | | 3 | 3 | pass |
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| set python session | set-python-session-var | | set | set | pass |
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| get from python session | get-python-session-var | | 4 | 4 | pass |
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| set R session | set-R-session-var | | set | set | pass |
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| get from R session | get-R-session-var | | 5 | 5 | pass |
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| functionality | block | arg | expected | results | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+----------------------------|
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| basic evaluation | | | | | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+----------------------------|
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| emacs lisp | basic-elisp | | 5 | 5 | pass |
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| shell | basic-shell | | 6 | 6 | pass |
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| ruby | basic-ruby | | org-babel | org-babel | pass |
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| python | basic-python | | hello world | hello world | pass |
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| R | basic-R | | 13 | 13 | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+----------------------------|
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| tables | | | | | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+----------------------------|
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| emacs lisp | table-elisp | | 3 | 3 | pass |
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| ruby | table-ruby | | 1-2-3 | 1-2-3 | pass |
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| python | table-python | | 5 | 5 | pass |
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| R | table-R | | 3.5 | 3.5 | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+----------------------------|
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| source block references | | | | | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+----------------------------|
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| all languages | chained-ref-last | | Array | Array | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+----------------------------|
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| source block functions | | | | | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+----------------------------|
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| emacs lisp | defun-fibb | | fibbd | fibbd | pass |
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| run over | Fibonacci | 0 | 1 | 1 | pass |
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| a | Fibonacci | 1 | 1 | 1 | pass |
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| variety | Fibonacci | 2 | 2 | 2 | pass |
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| of | Fibonacci | 3 | 3 | 3 | pass |
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| different | Fibonacci | 4 | 5 | 5 | pass |
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| arguments | Fibonacci | 5 | 8 | 8 | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+----------------------------|
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| bugs and tasks | | | | | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+----------------------------|
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| simple ruby arrays | ruby-array-test | | 3 | nil | expected "3" but was "nil" |
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| R number evaluation | bug-R-number-evaluation | | 2 | 2 | pass |
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| multi-line ruby blocks | multi-line-ruby-test | | 2 | 2 | pass |
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| forcing vector results | test-forced-vector-results | | Array | Array | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+----------------------------|
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| sessions | | | | | pass |
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|-------------------------+----------------------------+-----+-------------+-------------+----------------------------|
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| set ruby session | set-ruby-session-var | | :set | :set | pass |
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| get from ruby session | get-ruby-session-var | | 3 | 3 | pass |
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| set python session | set-python-session-var | | set | set | pass |
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| get from python session | get-python-session-var | | 4 | 4 | pass |
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| set R session | set-R-session-var | | set | set | pass |
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| get from R session | get-R-session-var | | 5 | 5 | pass |
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#+TBLFM: $5='(if (= (length $3) 1) (progn (message (format "running %S" '(sbe $2 (n $3)))) (sbe $2 (n $3))) (sbe $2))::$6='(if (string= $4 $5) "pass" (format "expected %S but was %S" $4 $5))
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** basic tests
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