* ob-R.el (org-babel-R-evaluate): Break the two branches into
two separate functions
(org-babel-R-evaluate-external-process): New function to
handle external process evaluation
(org-babel-R-evaluate-session): New function to handle session
evaluation
* ob.el (org-babel-initiate-session): new function derived
from previous `org-babel-switch-to-session'
(org-babel-switch-to-session): refactored to use new
`org-babel-initiate-session'
This breaks the original `org-babel-switch-to-session' into a new
function `org-babel-initiate-session' and
`org-babel-switch-to-session'.
* org-feed.el (org-feed-format-entry): Decode entry according to its
character encoding.
Feed entries may contain raw unicode characters that must be converted
to utf-8 before they can be properly inserted in the target buffer.
* org-feed.el (xml-substitute-special): Declare function for byte
compiler.
(org-feed-unescape): Removed.
(org-feed-parse-rss-entry, org-feed-parse-atom-entry): Use
`xml-substitute-special' to unescape XML entities.
TINYCHANGE
Patch by Michael Brand
* ob.el (org-babel-do-in-edit-buffer): Suppress message and
check that org-src buffer is current before attempting exit
* org-src.el (org-edit-src-code): New argument quietlyp allows
message to be suppressed
* org-src.el (ob-comint): require 'ob-comint
(org-src-babel-info): define variable
Also, reposition `org-src-do-at-code-block' and
`org-src-do-key-sequence-at-code-block' function definitions within
the file.
* ob.el (org-babel-do-in-edit-buffer): New macro to
evaluate lisp in the language major mode edit buffer.
(org-babel-do-key-sequence-in-edit-buffer): New function to call
an arbitrary key sequence in the language major mode edit
buffer
* org-src.el (org-src-switch-to-buffer): Add new allowed value
'switch-invisibly for `org-src-window-setup'.
* ob-keys.el (org-babel-key-bindings): Bind
`org-babel-do-key-sequence-in-edit-buffer' to x and C-x in
`org-babel-map'
* org-src.el (ob-keys): Require ob-keys, because
`org-babel-map' is used.
(org-src-do-at-code-block): New macro to evaluate lisp with
point at the start of the Org code block containing the code
in this edit buffer.
(org-src-do-key-sequence-at-code-block): New function to
execute command bound to key at the Org code block containing
the code in this edit buffer.
* org-src.el (org-edit-src-code): If at src block, store babel
info as buffer local variable.
(org-src-associate-babel-session): New function to associate
code edit buffer with comint session. Does nothing
unless a language-specific function named
`org-babel-LANG-associate-session' exists.
(org-src-babel-configure-edit-buffer): New function to be
called in `org-src-mode-hook'.
(org-src-mode-hook): add `org-src-babel-configure-edit-buffer'
to hook.
* ob.el (org-babel-switch-to-session-with-code): new function
to generate split frame displaying edit buffer and session.
* ob-keys.el (org-babel-key-bindings): binding for
`org-babel-switch-to-session-with-code'
* lisp/org.el (org-complex-heading-regexp-format): Document the variable.
(org-get-refile-targets): Use `org-complex-heading-regexp-format' to
make the regular expression for matching the headline.
Now we use the format for the complex heading regexp, which means that
Changing the TODO state, level, priority, or tags of a heading will
still allow the heading to be matched by the regexp.
* lisp/org.el (org-refile-check-position): New function.
(org-goto):
(org-refile-get-location): Call `org-refile-check-position'.
Samuel Wales has reported that the cache is loosing it, occasionally.
* lisp/org-capture.el (org-capture-place-template): Handle the checkitem
case.
(org-capture-place-item): Provide boundaries for the search to make
sure we do not get a match in a different tree.
> FYI: This is a know limitation of the LaTeX exporter[1] and the
> current state of this issue (dealing with skipped levels) is that
> patches for the problem are welcome. I agree that even if
> skipped-level-headlines are not allowed, they shouldn't be silently
> droped neither.
>
> Best,
> -- David
>
> [1] http://thread.gmane.org/gmane.emacs.orgmode/26413
I think I have a patch for this, see below. I've tested it briefly to
see that it works with both oddeven and odd level headings, but I would
appreciate other people taking a closer look/checking that it doesn't
break other things. I think I found the problem, in that if you have a
structure like
* A
*** B
(i.e. a level one and a level 3)
after it has found the level 1 content, it expects to find a level 2
subtree, whereas in fact there could be a level 2+ tree. See the
comment in the code for the change I made.
Stephen
* lisp/org-exp.el (org-export-preprocess-apply-macros): Fix the macro
argument parser.
The macro argument parser was swallowing white space after escaped commas.
* lisp/org-latex.el (org-latex-to-pdf-process): Add output-directory
option for the command pdflatex.
(org-export-as-pdf): Respect directory in path of EXPORT_FILE_NAME.
On Wed, Aug 4, 2010 at 1:26 AM, Manuel Amador <amador.manuel@gmail.com>wrote:
> Hi everybody,
>
> I am running into the following issue.
>
> I would like to export certain subtrees of an org file to a particular
> directory. I set the export property as follows:
>
> * Test 1
> :PROPERTIES:
> :EXPORT_FILE_NAME: some_directory/some_name
> :END:
>
>
> When I try exporting the above subtree as a pdf (say for example, by
> running
> C-c C-e 1 d), the .tex file is created in the appropriate target directory,
> but
> the .pdf file is created in the current directory (while emacs mistakenly
> reports that the pdf was not created). Is there a way to get this to work
> correctly?
>
>
Thanks and Regards
Noorul
* lisp/org-exp.el (org-export-with-LaTeX-fragments): New default t, which
now means to use MathJax processing for HTML. Also allow new value
`dvipng' to force the old image processing.
(org-infile-export-plist): Parse for MATHJAX setup line.
* lisp/org-html.el (org-export-html-mathjax-options): New option.
(org-export-html-mathjax-config): New function.
(org-export-html-mathjax-template): New option.
(org-export-html-preprocess): Call the LaTeX snippet processor with an
additional argument to declare special ways of processing.
(org-export-as-html): Bind the dynamical variable
`org-export-have-math'. Insert the MathJax script template when it is
needed by the document.
* lisp/org.el (org-preview-latex-fragment): Call `org-format-latex' with
the additional processing argument.
(org-export-have-math): New variable, for dynamic scoping.
(org-format-latex): Implement specific ways of processing. New
function argument for processing type.
(org-org-menu): Remove the entry to configure LaTeX snippet
processing.
MathJax is now the default for displaying math in a browser.
* org-agenda.el (org-agenda-clock-goto): Use `\C-c\C-x\C-j' for
`org-clock-goto' and `J' for `org-agenda-clock-goto'. If the heading
currently clocked in is not listed in the agenda, display this entry
in another buffer. If there is no running clock, display a help
message.
* org-clock.el (org-clock-set-current): append the filename after the
heading.
Hello,
>>>>> John Hendy writes:
> Suddenly I'm getting a line with nothing but "nil" between the caption and
> the table when exporting from org-mode to LaTeX. I swear this not happening.
> I believe I did a git pull on Friday or some time last week. The only reason
> I noticed is that I just set up emacs, org, and LaTeX on a new computer and
> tested an old file to make sure the export was working. I then checked my
> other computer with what I thought was a fine install and it's doing it now,
> too. I originally thought I missed something on the new computer, but now
> I'm wondering if it's from the fresh pull.
This patch (needed by my own mistake) should correct the problem.
Regards,
-- Nicolas
>From 38a3ae8cf8716af0db87a47a421b6d5af654d045 Mon Sep 17 00:00:00 2001
From: Nicolas Goaziou <n.goaziou@gmail.com>
Date: Tue, 10 Aug 2010 22:43:35 +0200
Subject: [PATCH] Fix empty label bug
* org-latex.el (org-export-latex-tables): Return "" instead of nil
when no label is attached.
* lisp/org-agenda.el (org-agenda-menu-show-match): New option.
(org-agenda-menu-two-column): New option.
(org-agenda-get-restriction-and-command): Implement dispatch menu
without showing the matcher, and with two-column display.
On Fri, Jul 30, 2010 at 4:38 PM, Rainer Stengele
<rainer.stengele@online.de>wrote:
> Having
>
> * headline 1
> :PROPERTIES:
> :VISIBILITY: folded
> :END:
> ** headline 2.1
> - stuff
> ** headline 2.1
> :PROPERTIES:
> :VISIBILITY: folded
> :END:
> - stuff
>
> C-u C-u <TAB>
> Switch back to the startup visibility of the buffer, i.e. whatever is
> requested by startup options and VISIBILITY properties in individual
> entries.
>
>
> does not result in
>
>
> * headline 1...>
>
>
> as expected. Instead I get:
>
>
> * headline 1...>
> ** headline 2.1...>
> ** headline 2.1...>
>
>
> removing the second folded propertiy results correctly in:
>
> * headline 1...>
>
>
> This looks like a bug in the :VISIBILITY: handling!?
>
>
>
I am not sure whether this is a bug. But it looks like the above scenario
was not considered initially. I might be wrong.
The attached patch seems to solve this problem.
* lisp/org.el: org-set-visibility-according-to-property ()
Use backward search instead of forward, so that top hierarchy gets
priority.
Thanks and Regards
Noorul
This command jumps to the headline of the clocking task within the
agenda buffer. `org-agenda-clock-goto' is bound to `C-c C-x C-j'.
It is different from `org-clock-goto', which jumps to the currently
clocking entry itself (bound to `J').
http://article.gmane.org/gmane.emacs.orgmode/28415
,----
| From: Carsten Dominik <carsten.dominik@gmail.com>
| Subject: Re: [Orgmode] Change resolution of LaTeX formulas in HTML output?
| To: Bastien <bastien.guerry@wikimedia.fr>
| Cc: amscopub-mail@yahoo.com, emacs-orgmode@gnu.org
| Date: Fri, 6 Aug 2010 12:46:28 +0200
|
| On Aug 5, 2010, at 12:32 AM, Bastien wrote:
|
| > amscopub-mail@yahoo.com writes:
| >
| >> Is there a way to control the resolution of PNG LaTeX formulas when
| >> you export to HTML?
| >
| > I've implemented this.
|
| I would not think that we need this change, the :scale and :html-scale
| parameters do this for in-buffer display and html formatting,
| respectively.
|
| Please revert this change.
|
| - Carsten
`----
* contrib/lisp/org-wikinodes.el: New file.
* lisp/org-exp.el (org-export-preprocess-after-radio-targets-hook):
(org-export-define-heading-targets-headline-hook): New hooks.
* lisp/org.el (org-modules): Add entry for org-wikinodes.el.
(org-font-lock-set-keywords-hook): New hook.
(org-open-at-point-functions): New hook.
(org-find-exact-headling-in-buffer):
(org-find-exact-heading-in-directory): New functions.
(org-mode-flyspell-verify): Better cursor position for checking if
flyspell should ignore a word.
* lisp/org-indent.el (org-indent-remove-properties):
(org-indent-add-properties): Make sure changing these properties does
not trigger modification hooks
* lisp/org.el (org-link-search-must-match-exact-headline): New option.
(org-link-search-inhibit-query): New variable.
(org-link-search): Search for exact headline match in Org files
* doc/org.texi (Internal links): Document the changes in internal links.
Internal links used to do a fuzzy text search for the link text. This
patch changes the behavior for Org files. Here a link [[My Target]]
now searches for an exact headline match, i.e. for a headline that
does look like "* My Target", optionally with TODO keyword, priority
cookie and tags.
The new option `org-link-search-must-match-exact-headline' is
`query-to-create' by default. This means that a failed link search
will offer to create the headline as a top-level headline at the end
of the buffer. This corresponds to a wiki-like behavior where missing
targets are automatically created. If you do not like this behavior,
change the option to t.
* ob.el (org-babel-execute-src-block-maybe): remove check for
`org-babel-no-eval-on-ctrl-c-ctrl-c'; this is done in the new
function `org-babel-execute-safely-maybe'
(org-babel-execute-maybe): new function to execute src blocks
or lob/call lines.
(org-babel-execute-safely-maybe): new function to execute src blocks
or lob/call lines via C-c C-c
(org-ctrl-c-ctrl-c-hook): remove
`org-babel-execute-src-block-maybe' and add
`org-babel-execute-safely-maybe'.
* ob-lob.el (org-ctrl-c-ctrl-c-hook): remove
`org-babel-lob-execute-maybe'
* ob-keys.el (org-babel-key-bindings): New function
`org-babel-execute-maybe' is bound to C-c C-v e and C-c C-v
C-e
This parameter default to 140 and controls the resolution of images
created from LaTeX fragments for HTML output. There is no :resolution
parameter: the resolution of images produced for a buffer is computed
from the font height.)
This was suggested by Uriel (amscopub-mail@yahoo.com).
2010-08-03 Dan Davison <davison@stats.ox.ac.uk>
* ob-octave.el (org-babel-octave-wrapper-method): use dlmwrite
to write delimited text instead of save -ascii
(org-babel-octave-import-elisp-from-file): specify that data
written to file is tab-delimited
2010-08-03 Dan Davison <davison@stats.ox.ac.uk>
* ob-R.el (org-babel-R-evaluate): Specify that tabular data is
tab-delimited
Prior to this we had
#+begin_src R
c("some words", "with spaces")
#+end_src
#+results:
| some | words |
| with | spaces |
2010-08-03 Dan Davison <davison@stats.ox.ac.uk>
* ob-python.el (org-babel-python-table-or-string): Fix
recognition of lists and tuples
Prior to this we had
#+begin_src python
return [1, 2]
#+end_src
#+results:
: [1, 2]
Hi,
I'm starting to work with ob-octave and found several problems:
The first, for which I have a fix (see patch below) is that octave's
output was passed on as a string instead of being interpreted as a table:
[diff removed]
Now this works:
8<------------------------------------------------------------
#+source: test_output
#+begin_src octave :results value vector
[[1 2 3];[4 5 6]]
#+end_src
#+results: test_output
| 1.00000000e+00 | 2.00000000e+00 | 3.00000000e+00 |
| 4.00000000e+00 | 5.00000000e+00 | 6.00000000e+00 |
8<------------------------------------------------------------
(before the patch you'd get a single table element with something like
"1 2 3\n 4 5 6\n" inside).
The second problem is that if I use octave table output as input to
another block, it gets interpreted as a string instead of a vector:
8<------------------------------------------------------------
#+results: test_output
| 1.25000000e+00 |
#+source: check_input
#+begin_src octave :var input=test_output() :results output
ischar( input )
size( input )
#+end_src
#+results: check_input
: input = 1.25000000e+00
: ans = 1
: ans =
: 1 14
8<------------------------------------------------------------
This has to do with the EXP notation. The 'e+00' suffix makes the
whole table into a string. The problem is with "%S" in the formatting
inside org-babel-octave-var-to-octave.
The following patch seems to fix it (and makes it possible to work with
complex numbers inside the tables)::
[diff removed]
A third problem is with org-babel-octave-var-to-octave.
For example:
: (org-babel-octave-var-to-octave '( ( 1 2 3 ) ( 4 5 6 ) ))
: -> "[[1, 2, 3], [4, 5, 6]]"
This is not a 2x3 matrix, but a 1x6 vector:
: octave-3.2.3:1> [[1,2,3],[4,5,6]]
: ans =
: 1 2 3 4 5 6
a semicolon ';' or '\n' is needed between rows instead of a comma.
To sum up:
- 2 patches for prepare-session and importing the results back as
org-tables (I don't know if these patches break anything).
- 1 problem with matrix notation in org-babel-octave-var-to-octave.
I'll try to provide a patch for this today.
2010-08-01 Juan Pechiar <Pechiar@computer.org>
* ob-octave.el (org-babel-octave-evaluate-external-process):
use `org-babel-octave-import-elisp-from-file' instead of
`org-babel-eval-read-file'.
(org-babel-octave-var-to-octave): separate matrix rows with
';', and use '%s' as format specifier instead of '%S'
From: Alexandre Passos <alexandre.tp@gmail.com>
> I was editing an org document on a server earlier today, remotely
> using tramp, and continuously exporting it to html. When I added
> LaTeX, it exported once and then not anymore, failing because it
> couldn't create a directory anymore. So I found out that patching
> org-export-latex to pass a "t" parameter to org-make-directory fixes
> this, and it continues to work perfectly. This is the modified version
> of that function, if anyone else is interested in this constrained
> case. The only change I made was right under the "make sure directory
> exists" comment.
Hello,
>>>>> Neil Hepburn writes:
> The latest version (7.01g) seems to have a bug when exporting to PDF
> (and LaTeX) with tables with labels. The export does not label the
> table in the LaTeX file although it is labeled in the .org file.
Curiously, it looks like \label code was removed at some time.
This quick fix should put labels back.
Regards,
-- Nicolas
>From 64855c52b20766db9898ce82316fac11d51de72d Mon Sep 17 00:00:00 2001
From: Nicolas Goaziou <n.goaziou@gmail.com>
Date: Wed, 28 Jul 2010 20:54:40 +0200
Subject: [PATCH] Add labels to tables.
* org-latex.el (org-export-latex-tables): add label if any
* org-latex.el (org-export-latex-convert-table.el-table): fix little
mistake when inserting label
Hello,
Like what is already done with drawers, point should not move when
cycling visibility of headings and list items.
The call to `org-back-to-heading' this patch removes seems redundant
anyways.
Regards,
-- Nicolas
>From 17cd55557d747366c90fad47b44edeac2daf920b Mon Sep 17 00:00:00 2001
From: Nicolas Goaziou <n.goaziou@gmail.com>
Date: Sun, 25 Jul 2010 23:14:08 +0200
Subject: [PATCH] Cursor stays at same column when cycling visibility.
* org.el (org-cycle-internal-local): Removed an unnecessary call to
`org-back-to-heading' that was preventing point to stay at its
column when cycling visibility.
The attached patch suppresses a compiler warning in org-gnus.el
* lisp/org-gnus.el:
Suppress compiler warning by declaring outside function
nnimap-retrieve-headers-from-file.
On Sat, Jul 31, 2010 at 12:54 PM, Simon Guest <simon.guest@tesujimath.org>wrote:
> Hi,
>
> I'm making my first real Org mode Beamer presentation, using org-mode
> 7.01g, and trying to set the ignore_heading for a multi-column slide.
>
> In column mode, when I hit 'e' in the Env column, Emacs says:
> Wrong type argument: commandp, org-beamer-set-environment-tag
> (and org-beamer-set-environment-tag does not appear to be defined
> anywhere).
>
> It's triggered from this code in org-colview.el
> ((equal key "BEAMER_env")
> (setq eval '(org-with-point-at pom
> (call-interactively 'org-beamer-set-environment-tag))))
>
> Any idea what's wrong?
>
>
This function was renamed to org-beamer-select-environment and I think it
was not changed here.
The attached patch should solve the problem.
* lisp/org-colview.el
Use org-beamer-select-environment instead
of org-beamer-set-environment-tag
Thanks and Regards
Noorul
Nick Dokos <nicholas.dokos@hp.com> wrote:
> John Hendy <jw.hendy@gmail.com> wrote:
>
> > Just to be sure I created an blank org file with only this:
> >
> > * test
> >
> > #+CAPTION: test table
> > #+ATTR_LaTeX: placement=[H]
> > | 1 | 2 | 3 | 4 |
> > |------+------+------+------|
> > | test | test | test | test |
> > | test | test | test | test |
> >
> > It gets exported to this:
> >
> > \begin{table}[htb]
> > \caption{test table}
> > \begin{center}
> > \begin{tabular}{llll}
> >
> > Did something change between 6.35 and 7.01 or in the LaTeX table options?
> >
>
> I think that placement works fine for figures, but not for tables. In
> fact, I cannot find the code that's supposed to do this for tables: I
> suspect that it never existed. So unless I'm mistaken, it seems that
> tables never got the placement treatment that figures did.
>
Try the following patch (might be wrong in detail, and its scope might
be too limited, but I hope it's not too far off: at least it seems to
work on your simple table.) It may also be white-space damaged, so some
reformatting may be needed after applying it.
Nick
>From 4c8cdde9f3d80edc882efe83562a934fd9a6a8c8 Mon Sep 17 00:00:00 2001
From: Nick Dokos <nicholas.dokos@hp.com>
Date: Fri, 23 Jul 2010 17:54:06 -0400
Subject: [PATCH] Process latex placement attribute for tables.
Figures got placement attributes previously, but tables never did.
David Maus <dmaus@ictsoc.de> writes:
Hi David,
>>I'm trying to add a workaround to org-gnus.el which should save the
>>slowness of querying the IMAP server by looking up the article number
>>in the group's .overview file. But since I don't have nnimap groups,
>>we have to play some question & answer game. ;-)
>
>>Please apply this patch and set
>>`org-gnus-nnimap-query-article-no-from-file' to t.
>
> The patch does not work: It calls `nnimap-retrieve-headers-from-file'
> without the required arguments (group server)
Argh, stupid me! Here's a corrected patch.
--8<---------------cut here---------------start------------->8---
--8<---------------cut here---------------end--------------->8---
> and the headers are not fetched because
> `nnimap-retrieve-headers-from-file' looks for a NOV cache file, not
> .overview.
Aren't overview file and NOV file synonyms?
Hm, anyway. In the Gnus docs I've found this paragraph:
,----[ (info "(gnus)IMAP") ]
| `nnimap-nov-is-evil'
| Never generate or use a local NOV database. Defaults to the value
| of `gnus-agent'.
|
| Using a NOV database usually makes header fetching much faster,
| but it uses the `UID SEARCH UID' command, which is very slow on
| some servers (notably some versions of Courier). Since the Gnus
| Agent caches the information in the NOV database without using the
| slow command, this variable defaults to true if the Agent is in
| use, and false otherwise.
`----
So maybe we're trying to replace one slow command with another slow
command. Especially, the fact that Courier is explicitly mentioned is a
bit frustrating. Well, let's try it out and see if it helps a bit.
> Alas: I couldn't figure out how to enable NOV cache for my nnimap
> group. Setting `nnimap-nov-is-evil' to nil didn't help.
This variable defaults to the value of `gnus-agent', so I assume the
agent has to be enabled (which is default), and most probably the IMAP
server has to be agentized as well. That can be done in the server
buffer (`^' in *Group*), and then:
,----[ (info "(gnus)Server Agent Commands") ]
| `J a'
| Add the current server to the list of servers covered by the Gnus
| Agent (`gnus-agent-add-server').
`----
Bye,
Tassilo
* lisp/org.el (org-insert-time-stamp): Fix org-insert-time-stamp so
that the value of org-last-inserted-timestamp includes time range.
Previously, org-last-inserted-timestamp included only the
beginning of a time range (e.g., 10:00 instead of 10:00-12:00).
This caused parsing problems elsewhere, such as when rescheduling
items with repeating timestamps and a time range (the repeater
was removed during rescheduling).
* org-wl.el (org-wl-store-link-message): Provide link property
for message-id without angle brackets.
The message-id header field can be used to maintain the connection
between an Org entry and an internet message. The angle brackets have
a special meaning when performing a TAGS/PROPS/TODO query (Cf. Org
mode manual 10.3.3). To be able to use the message-id as an entry
property we have to remove the angle brackets to be able to perform a
search for the entry associated with a particular message.
