Commit Graph

312 Commits

Author SHA1 Message Date
Eric Schulte 8318845f6d babel: stashing away text dangling after the process mark in comint buffers
* contrib/babel/lisp/org-babel-comint.el (org-babel-comint-with-output):
  If there is dangling text left after the process mark in a comint
  buffer, it will now be safely stored away during babel execution,
  and then replaced when babel is finished with the buffer.

  This commit also fixes some indentation issues.
2010-06-07 12:25:58 -07:00
Eric Schulte 909f375ba6 babel: fixing indentation in org-babel-ruby.el
* contrib/babel/lisp/langs/org-babel-ruby.el (org-babel-execute:ruby):
  fixing indentation

* contrib/babel/lisp/langs/org-babel-ruby.el (org-babel-ruby-evaluate):
  fixing indentation
2010-06-07 12:13:37 -07:00
Eric Schulte 6e34e75888 babel: small wait on new ruby sessions to allow process to start
* contrib/babel/lisp/langs/org-babel-ruby.el (org-babel-ruby-initiate-session):
   Adding a small wait after stating a new ruby session.  This avoids
   errors with `ansi-color-process-output' not being able to find the
   process mark.
2010-06-07 12:08:43 -07:00
Eric Schulte dc2baab09c babel: protecting restrictions on `org-babel-execute-subtree' 2010-06-07 11:52:04 -07:00
Eric Schulte ee94addaac babel: now strips protective commas from code blocks on tangling 2010-06-07 11:46:11 -07:00
Eric Schulte 4e43e7fea8 babel: adding library-of-babel functions for file I/O
* contrib/babel/lisp/org-babel.el (org-babel-insert-result): Replaced
  call to `org-cycle' with a call to the simpler and more appropriate
  `org-table-align'.

* contrib/babel/library-of-babel.org (Read/Write): adding
  library-of-babel functions for file I/O
2010-06-06 19:56:09 -07:00
Eric Schulte 367d81d9dc babel: all code blocks with sessions are now evaluated on export
* contrib/babel/lisp/org-babel-exp.el (org-babel-exp-do-export):

  This brings babel more inline with Sweave, by ensuring that any code
  block which could change the state in a persistent session is
  executed.  Prior to this change the following org-mode text like would
  not export as expected because the x variable would not be
  initialized.

  ** inline expressions
     :PROPERTIES:
     :session:  *R*
     :END:

  #+begin_src R :exports code :results silent
    x<-5
  #+end_src

  the sum of 1 and 4 is equal to src_R{x}
2010-06-06 19:13:14 -07:00
Nicolas Goaziou 359a86cda4 babel-asymptote: now accepts variables in a variety of types 2010-06-04 09:51:18 -06:00
Eric Schulte 198780f1ff babel: adding some newline padding around tangle code blocks 2010-06-02 14:07:20 -06:00
Eric Schulte c5e3660fa9 babel: tangle works when buffer name and file name differ
Thanks to "w t" from the mailing list for reporting this bug and
  providing reproduction information.
2010-06-02 09:07:23 -06:00
Eric Schulte 47a6c25df3 org-babel-tangle: fixing indentation 2010-06-02 09:07:22 -06:00
Eric Schulte afab7897a5 babel: fixed error resolving references on export
Thanks to Nicolas Goaziou for reporting this problem
2010-06-02 09:07:01 -06:00
Eric Schulte b7e273f25d babel-exp: minor documentation and indentation changes 2010-06-02 09:07:00 -06:00
Eric Schulte 8fac7aa38b Merge branch 'master' of git+ssh://repo.or.cz/srv/git/org-mode 2010-05-28 08:48:22 -06:00
Eric Schulte ff58dacc7c babel: `org-babel-tangle-w-comments' controls comment insertion in tangled code
* contrib/babel/lisp/org-babel-tangle.el (org-babel-spec-to-string):
  The insertion of automatically generated comments into tangled code
  is now customizable through the `org-babel-tangle-w-comments'
  variable.
2010-05-28 08:48:03 -06:00
Dan Davison e5d8764de6 babel: Declare R-specific header arguments
* babel/lisp/langs/org-babel-R.el
(org-babel-header-arg-names:R):
New variable to contain R-specific header args
2010-05-28 09:53:13 -04:00
Dan Davison 71cd358e21 babel: check properties for language-specific header arguments
* contrib/babel/lisp/org-babel.el
(org-babel-params-from-properties):
Check for language-specific header arguments
(org-babel-parse-src-block-match):
Pass lang parameter when checking properties for header args
(org-babel-parse-inline-src-block-match):
Pass lang parameter when checking properties for header args
2010-05-28 09:50:20 -04:00
Michael Sperber 6fc2ea3b9b Xemacs incompatibilities
Carsten Dominik <carsten.dominik@gmail.com> writes:

> On May 17, 2010, at 4:39 PM, Michael Sperber wrote:
>
>> In particular, fixing the require won't be enough: org-babel-python.el
>> uses `run-python' and interacts with the inferior Python, whereas
>> python-mode.el defines `py-shell'.
>>
>> Should I try to abstract over the differences?
>
> Yes, this would be much appreciated. (I think, Eric or Dan?)

OK, I've attached a patch that makes `org-babel-python' work on XEmacs.
Most of the issues are pure XEmacs issues.  Notes:

- XEmacs doesn't have [[:digit:]] - I hope to rectify this in the
  future, but it seems there's no downside in this particular case to
  replacing by [0-9].
- XEmacs doesn't have `move-end-of-line', but does have `end-of-line'.
  I don't understand the intent of having both of these, but the code
  seems fine with `end-of-line'.
- It seems there are way too few `require's throughout org-babel.  I
  don't know if it's OK to add the ones I needed.
- `org-babel-python-evaluate' looked broken as-is: It doesn't use the
  `body' argument properly, the result is (I think) processed in the
  wrong order and not properly split into lines.  I've fixed all these,
  but a review is probably in order.
2010-05-26 22:45:01 -06:00
Eric Schulte 5d52daab10 babel: org-babel-execute-buffer is no longer flummoxed by hidden subtrees 2010-05-26 19:44:04 -06:00
Eric Schulte 8d78778c89 babel: updated key bindings in refcard
and removed a binding which was shadowing the `keyboard-quit'
2010-05-26 16:55:48 -06:00
Eric Schulte 4f113630f8 org-babel-exp: no longer throws errors on empty bodies 2010-05-25 20:20:13 -06:00
Eric Schulte ceeb4681ef babel: tangled files which include shebang lines are now made executable 2010-05-25 20:01:20 -06:00
Eric Schulte 6151c88f10 babel: replaced `line-number-at-pos' with `count-lines' 2010-05-25 17:31:34 -06:00
Eric Schulte d84699459e babel: xemacs variable compatibility check -- thanks to Volker Zell 2010-05-25 17:29:41 -06:00
Eric Schulte 2139651c0d babel: org-babel-clean-text-properties now checks for valid argument
thanks to Michael Sperber for pointing this out
2010-05-17 17:13:20 -06:00
Eric Schulte 236f209b25 babel: changes to org-babel key bindings 2010-05-17 17:08:32 -06:00
Carsten Dominik 38b4fcc90c XEmacs compatibility 2010-05-14 14:40:44 +02:00
Eric Schulte b7555ae433 babel: new keymap `org-babel-map' and new prefix keys "C-c C-v" 2010-05-12 23:51:41 -06:00
Eric Schulte 98af57cdbd babel: ob-sh.el now respects the :results "scalar" option 2010-05-07 17:18:38 -06:00
Dan Davison 2d1025298e babel: More concise matlab/octave code template
Patch by Christopher Long
2010-05-03 21:45:27 -04:00
Dan Davison 245d98786d babel: matlab: detect end of evaluation under Emacs Link
Currently, this uses the presence of a temporary file to signal that
Matlab Emacs Link evaluation is not yet complete.

Emacs Link support added in collaboration with Christopher Long.
2010-05-03 21:45:01 -04:00
Benjamin Andresen c133dd394e babel: Fix org-babel-screen after expand changes 2010-05-02 21:30:13 -04:00
Dan Davison d2b9343029 babel: Avoid trouble with '%' in matlab/octave output
Patch by Christopher Long
2010-05-02 18:26:22 -04:00
Dan Davison 65a98e3282 babel: fix editing error in org-babel-octave.el 2010-05-02 00:41:53 -04:00
Dan Davison 1a43a5939b Merge branch 'octave-matlab' 2010-04-30 18:26:37 -04:00
Dan Davison a61de7b130 babel: matlab: don't try matlab-shell if using emacs link 2010-04-30 18:23:36 -04:00
Eric Schulte a3cc050a96 babel: `org-babel-get-colnames' no longer requires hline 2010-04-30 13:03:46 -06:00
Dan Davison 6f399c20b6 babel: Allow EmacsLink to be used for matlab session evaluation
To use EmacsLink, the user will need to set
org-babel-matlab-with-emacs-link to a non-nil value, and also arrange
that (matlab-with-emacs-link) evaluates to a non-nil value.
2010-04-30 14:39:31 -04:00
Dan Davison 10a07a644b babel: R: allow forcing of colnames without hline 2010-04-30 14:14:27 -04:00
Dan Davison 7f3e64bfb4 babel: R: output colnames when other languages would 2010-04-30 14:14:13 -04:00
Eric Schulte 6a1f5b2bcb babel: ob-emacs-lisp now wraps body in a progn on execute 2010-04-27 13:55:48 -06:00
Dan Davison 837e898936 babel: Fall back to generic expand function during tangling 2010-04-27 15:02:55 -04:00
Eric Schulte 44bb82d38e babel: `org-babel-ref-resolve-reference' doesn't break paren nesting when resolving indicies 2010-04-24 13:26:34 -06:00
Eric Schulte b8adc74894 babel: ob-emacs-lisp and ob-clojure now only wrap bodies in `let' forms when variables are present 2010-04-24 09:21:14 -06:00
Eric Schulte bc0a6c624d babel: adding :no-expand option to code blocks to inhibit body expansion 2010-04-24 09:08:27 -06:00
Eric Schulte c12e18b6cf babel: org-babel-reassemble-table checks for matching table/name dimensions 2010-04-23 11:54:31 -06:00
Dan Davison b8c4bb27ba babel: Use org-src edit buffer for expanded body preview 2010-04-23 10:10:01 -06:00
Eric Schulte 2f71d79e5e org-babel-c: now using org-babel-read on outline-property parameters 2010-04-23 10:10:00 -06:00
Eric Schulte 9124e9055d fixed bug in org-babel-execute:C 2010-04-23 10:10:00 -06:00
Eric Schulte 59251c8d08 babel: fixed bug in org-babel-execute:gnuplot related to body-expand changes 2010-04-23 10:10:00 -06:00