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Author SHA1 Message Date
Eric Schulte c38294d21f DONE Remove protective commas from # comments before evaluating 2009-06-01 16:56:59 -07:00
Dan Davison 8fef1f0509 More notes on sessions: need for header arg evaluation when we edit code, and need for removing protective commas 2009-06-01 15:14:35 -04:00
Dan Davison f03e3ed603 Further notes on org-babel session and ESS and *Org Edit Src Example* buffers. 2009-05-31 18:07:13 -04:00
Dan Davison ce96d45374 Added reminder/request that we bear ESS in mind when designing org-babel 'sessions' 2009-05-31 17:48:00 -04:00
Dan Davison e4263daf76 Make org table result have header row and hline when appropriate. (This should have been included with commit a39d68640e). The approach I've taken is to make R always write the column names into the tsv file. If the result does not have user-supplied column-names, then R writes default column names of the form V1,V2,...,V$numcols. After reading the tsv back into lisp, we check whether it has "real" column names or the R defaults. If it has real column names, then I give the org table an hline. 
I expect this will conflict with Eric's work on sessions, but we can deal with that.

There is a remaining quoting issue that needs to be dealt
with. E.g. with an unquoted string in the input, it comes out as
quoted in the result. This seems bad, since if you use the output as
new input you get something different (with extra
quoting). (non-idempotence if that's the right term).

| col1 | col2    | col3 |
|------+---------+------|
|    1 | 2       |    3 |
|    4 | schulte |    6 |

tabel

| "col1" | "col2"    | "col3" |
|--------+-----------+--------|
|      1 | 2         |      3 |
|      4 | "schulte" |      6 |
 2009-05-30 16:45:26 -04:00
Dan Davison eb29bef93f Made org-babel-remove-result interactive. Eric if you agree do you want to decide on a binding? 2009-05-30 15:59:46 -04:00
Dan Davison e7f860cb19 Altered the python code in the chained references example. AIui the example was producing the correct answer (ruby class Array) but for the wrong reason (python was returning None) 2009-05-30 15:01:55 -04:00
Dan Davison a39d68640e Allowing org-tables with hline to be referred to and passed into R. If hline is present, the first row of the table becomes the column names in R. This allows the grades example to run for me which was not true before. Eric: any commits I make should be viewed as tentative -- feel free to reject or recode them. 2009-05-30 15:00:06 -04:00
Dan Davison 2ca59eaa0f Preventing end of buffer error when no newline after #+end_src 2009-05-29 23:34:50 -04:00
Eric Schulte f87a673c9c replacing parts of org-babel lost in a merge 
namely some extended discussion of environments and sessions under
  the "Create objects in top level (global) environment in R?" header
 2009-05-29 18:01:38 -07:00
Eric Schulte d49084b73d small additions to org-babel-comint.el 2009-05-29 17:45:40 -07:00
Eric Schulte 2fe76cd094 adding discussion to PROPOSED conversion between org-babel and noweb (e.g. .Rnw) format 2009-05-29 17:45:25 -07:00
Eric Schulte 986fcb4652 DONE pass multiple reference arguments into R 
This should be working, see the following example...

n + m

: 10
 2009-05-29 16:45:03 -07:00
Eric Schulte 8967366a3b back to the working version 2009-05-29 16:44:33 -07:00
Dan Davison fe22667f78 proposed org-babel <-> noweb interconversions 2009-05-29 16:22:09 -04:00
Dan Davison 8deae3517b Trying to resolve conflict while understanding very little about git 2009-05-29 16:21:12 -04:00
Dan Davison 2adb00f678 proposed org-babel <-> noweb interconversions 2009-05-29 16:17:03 -04:00
Eric Schulte e8e24c024b added TODO fully purge org-babel-R of direct comint interaction 2009-05-27 19:01:29 -07:00
Eric Schulte c5a58ad6aa moving generalized comint functions to new file org-babel-comint.el 2009-05-27 19:00:13 -07:00
Eric Schulte a54c27ec91 attempts at improving sb snippet 2009-05-27 18:42:15 -07:00
Eric Schulte aca19b2efc added my session thoughts for global variables 2009-05-27 16:40:47 -07:00
Eric Schulte 906c524234 Merge branch 'master' of git@github.com:eschulte/org-babel 
Conflicts:
	org-babel.org
 2009-05-27 16:40:26 -07:00
Eric Schulte 2c3c91ed12 removed org-babel-ui (tabbing blocks) as the functionality will be included in org-mode core 2009-05-27 16:34:48 -07:00
Eric Schulte 2d1a5405d1 added task for improving the sb snippet 2009-05-27 16:33:22 -07:00
Dan Davison 5db027b3e1 Noted in hline TODO that plotting histogram in the grades example is blocked by not being able to deal with hline in the input table. (AIUI) 2009-05-26 19:40:47 -04:00
Dan Davison 57783f9ce2 A few new TODOS: deal with hlines in tables, how do we pass multiple args in R, and some extended wittering about scoping issues in R: basically I want to argue for not abandoning the Sweave-style mode where objects created in code blocks are persisten across different blocks. 2009-05-26 19:16:46 -04:00
Eric Schulte db9f189649 fixed bug: DONE R-code broke on "org-babel" rename 2009-05-25 19:23:30 -07:00
Eric Schulte aec7ec05d3 more fleshing out of the introduction 2009-05-25 18:20:32 -07:00
Eric Schulte b5174f5a7d misc changes 2009-05-25 15:13:56 -07:00
Eric Schulte 8d271e1e92 changed README 2009-05-25 14:52:42 -07:00
Eric Schulte 02634f7d85 tweaked grades example (need some R help in plotting histogram) 2009-05-24 15:47:21 -07:00
Eric Schulte 28c29ee51e added another example 2009-05-24 15:40:54 -07:00
Eric Schulte 9aa713be8c updated tag line 2009-05-24 14:10:03 -07:00
Eric Schulte 6614df037f now passing all tests with new name "org-babel" 2009-05-24 14:08:02 -07:00
Eric Schulte f3ed956d03 removing the "existing_tools" directory 2009-05-24 13:57:53 -07:00
Eric Schulte 9247200bb0 renaming the org-babel/ directory to the lisp/ directory 2009-05-24 13:56:20 -07:00
Eric Schulte 19ce859d05 organizing yasnippets snippets 2009-05-24 13:54:05 -07:00
Eric Schulte 6451d2df1a more cleanup and removal of the term "litorgy" 2009-05-24 13:52:51 -07:00
Eric Schulte 36eb5751d8 re-organizing main org-babel.org file 
- replacing litorgy with org-babel
  - splitting old requirements discussion into separate file
 2009-05-24 13:48:29 -07:00
Eric Schulte 10bc87beac adding introduction (from litorgy.org) to main org-babel.org file 2009-05-24 13:43:56 -07:00
Eric Schulte 4136f27680 renamed main rorg.org to org-babel.org 2009-05-24 13:42:56 -07:00
Eric Schulte 2b9b2ee7a3 rename litorgy to org-babel 2009-05-24 13:41:14 -07:00
Eric Schulte 8e9d3a51b7 moving files to new names 2009-05-24 13:39:25 -07:00
Eric Schulte e82fb2566c replacing litrogy with babel 2009-05-24 13:38:01 -07:00
Eric Schulte 8c568ee5fa stubbing out the introductory text in litorgy.org 2009-05-24 13:27:56 -07:00
Eric Schulte ddbb32fdd5 renamed examples.org to litorgy.org 2009-05-24 13:02:08 -07:00
Eric Schulte 891ed7b37b fleshing out examples 2009-05-24 12:23:44 -07:00
Eric Schulte f2c334b30d DONE ensure that table ranges work 2009-05-24 10:35:13 -07:00
Eric Schulte b8ecf9596b rename org-table-truncate-at-newline' to litorgy-table-truncate-at-newline' 2009-05-24 10:35:05 -07:00
Eric Schulte acda13f208 DEFERRED re-implement R evaluation using ess-command or ess-execute 2009-05-23 14:44:30 -07:00