Eric Schulte
6b5747fdfa
Revert "DONE take default values for header args from properties"
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This is breaking many of our tests, so I'm reverting it until I can figure out a fix
This reverts commit 9936814ffc
2009-07-22 19:02:12 -06:00
Eric Schulte
9936814ffc
DONE take default values for header args from properties
2009-07-22 18:59:10 -06:00
Eric Schulte
51cfe9e468
DONE add =:tangle= family of header arguments
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these can be used to inhibit tangling
2009-07-22 18:30:30 -06:00
Eric Schulte
4f15568a96
org-babel-ded-worg looks great, I hope you don't mind I'm adding a
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"Reference / Documentation" section to hold documentation on the many
header arguments
2009-07-22 17:17:06 -06:00
Eric Schulte
34cf22bdaa
DONE Fix nested evaluation
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and commenting out debugging statements
2009-07-22 16:05:13 -06:00
Eric Schulte
66faa937f8
DONE deeply nested arguments still fails
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added a function `org-babel-ref-split-args' for splitting arguments
into top-level balanced expressions
2009-07-22 16:04:19 -06:00
Eric Schulte
fe0532e509
DONE One supplied, one default
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We are now skipping results lines when resolving references which
specify arguments, as the arguments would change the value of the
source-code block.
2009-07-21 16:46:26 -06:00
Eric Schulte
2bfa420c6a
DONE empty parens () not recognised as lob call
2009-07-21 16:27:48 -06:00
Eric Schulte
53c08df3ae
so it looks like regardless of the syntax used we're not overriding
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the default argument values.
2009-07-21 12:22:59 -06:00
Eric Schulte
85dc35656d
DONE gnuplot sessions
2009-07-20 13:33:53 -06:00
Eric Schulte
e5b2e307fa
removed the result-params from the let in org-babel-gnuplot,
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keeping the vars line in the let for now because of the peculiar
handling of the vars in gnuplot.
2009-07-20 13:10:11 -06:00
Eric Schulte
809462e3ee
Merge branch 'master' into gnuplot
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Conflicts:
lisp/langs/org-babel-gnuplot.el
With respect to the conflict, I will try removing the lines you
mentioned before my next commit.
2009-07-20 13:07:29 -06:00
Eric Schulte
c81479b161
added a :file header argument to gnuplot
2009-07-20 13:04:40 -06:00
Eric Schulte
307c7667db
still working on gnuplot variable support
2009-07-19 16:40:28 -06:00
Dan Davison
b766b094a0
Using temp function definition to tidy R evaluation code.
2009-07-19 18:03:33 -04:00
Eric Schulte
9bdddde454
gnuplot: switching to using user defined variables for handling variables
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This will require gnuplot version 4.2 or up
2009-07-19 15:46:05 -06:00
Dan Davison
2b66de1c1b
Reorganising R evaluation code.
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With this change we avoid messing about extracting the output from the
comint buffer in the :results value case (the value has already been
written to file).
2009-07-19 17:45:00 -04:00
Eric Schulte
01c6bd2b33
pulled the gnuplot variable processing out into it's own function
2009-07-19 15:30:40 -06:00
Eric Schulte
20eec8d94b
additional requirements and initialization for gnuplot
2009-07-19 15:01:47 -06:00
Dan Davison
162b522728
Fixing srcname function call regexps.
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But still some improvement of this to be done (see bugs section).
2009-07-19 14:29:10 -04:00
Dan Davison
aa1747b065
Quite a few revisions / additions to the tasks and bugs lists.
2009-07-19 13:56:38 -04:00
Dan Davison
e4d14d41ec
This should have been part of the parent commit ( 911e77a7c9)
2009-07-19 13:55:42 -04:00
Eric Schulte
585f69d1f7
Merge branch 'master' into gnuplot
2009-07-19 11:12:09 -06:00
Eric Schulte
28c3262848
fixed variable name in org-babel-R-evaluate
2009-07-19 11:06:44 -06:00
Eric Schulte
91301b8c29
Merge branch 'master' into gnuplot
2009-07-19 11:02:17 -06:00
Dan Davison
911e77a7c9
Code rearrangement: restrict R column names changes to org-babel-R.el.
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On reflection this is (currently) R-specific functionality and should
not affect the code in org-babel.el.
2009-07-19 12:01:00 -04:00
Dan Davison
8294122f8f
Trying to retain whitespace in output results from R.
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I don't believe this solves it, but chomp is more the right thing to
do than trim. I'd like to retain all the whitespace so that alignment
of columns is correct in stdout.
2009-07-19 01:47:37 -04:00
Dan Davison
062bc09d84
Adding support for column names (header line) when using R.
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Unlike the other languages, it's central to R to be able to index
columns of a data frame d, either by d[,"columnname"] of d$columnname.
With this change, if colnames are present in the *input* from
org-babel, the corresponding R variable is *always* constructed with
the colnames.
In addition, with the :colnames header arg, the *output* to elisp/org
buffer contains the colnames separated from the rest of the table by
'hline. This behaviour is not default because other languages may
expect a simple table without the 'hline.
2009-07-19 01:07:07 -04:00
Eric Schulte
4ff540bfd7
started bringing in options from org-plot
2009-07-18 18:05:11 -06:00
Dan Davison
ef6668df61
Merging examplizing-output into master
2009-07-18 18:10:14 -04:00
Dan Davison
bcfa3b95c7
Add ability to remove #+begin_example blocks of output.
2009-07-18 17:47:30 -04:00
Eric Schulte
fcfe110fef
correctly handling exclusive :exports params
2009-07-18 14:24:47 -06:00
Eric Schulte
44ff72261c
moved org-babel-merge-results into anonymous function in flet
2009-07-18 14:24:46 -06:00
Dan Davison
c2b255e0da
Changing default min lines for block output to 10
2009-07-18 15:52:51 -04:00
Dan Davison
4dfe45cdf1
Trivial: function name change for clarification.
2009-07-18 15:39:00 -04:00
Dan Davison
04a4a4862e
Using #+begin_example...#+end_example blocks for output.
2009-07-18 15:38:21 -04:00
Eric Schulte
fdae720848
removed large block of lang-specific comments from org-babel.el
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I assume that since all tests are passing we no longer need this old
code. Either way we can always retrieve it from version control.
2009-07-17 22:10:43 -06:00
Eric Schulte
6661bb70d5
new default export parameters
2009-07-17 22:08:02 -06:00
Eric Schulte
bda750be2f
combination of :results parameters now takes mutually exclusive parameter groups into consideration
2009-07-17 22:06:37 -06:00
Eric Schulte
8408187f4a
using org-babel-merge-params for inline header arguments
2009-07-17 21:36:47 -06:00
Dan Davison
83fc113e29
This was just an idea. We could do it but I'm reverting for now.
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Revert "Make org-babel-tangle comment with ;;*."
This reverts commit c6b628d3ad
2009-07-17 14:51:49 -04:00
Dan Davison
017d46e50f
Reinstated force-results-to-vector: passing all tests in table.
2009-07-17 14:37:43 -04:00
Dan Davison
8c9d8b6c28
Don't attempt to remove result when :results silent.
2009-07-17 13:58:04 -04:00
Dan Davison
9ebb554527
o-b-merge-params function was not allowing whitespace around the '=' sign.
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At some point it might be useful (to me at least) to clarify our rules
regarding whitespace, and make guidelines for using " \t\f\n\v\r" et
al (and [:space:]?).
2009-07-17 13:27:56 -04:00
Dan Davison
7eecca6db5
Reinstating a previous change that got lost in the last merge somehow.
2009-07-17 10:49:26 -04:00
Dan Davison
72ccd88c97
Merging master into results.
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THis brings in the bugfix from 4f15280631
2009-07-17 09:54:11 -04:00
Dan Davison
5d49db67ab
Correcting up cut/paste mistakes made in manual conflict resolution.
2009-07-17 00:50:02 -04:00
Eric Schulte
1fa18830ab
gnuplot is able to generate graphs, but needs much more work
2009-07-16 22:20:58 -06:00
Dan Davison
4f15280631
Bugfix: not assuming that we're in a source block when inserting result.
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The o-b-insert-result code was assuming that we were in a source
block, where it could find the head, etc. However there are two
situations when this is not true LoB calls (although they can't output
results to buffer in this branch, they can in branch 'results'), and
org-babel-exp (which calls o-b-insert-result in an empty temp buffer).
2009-07-17 00:18:03 -04:00
Dan Davison
64a5c0e379
Merging master into results: required manual conflict resolution.
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results had upgraded to using org-babel-merge-params (although
apparently not yet in org-babel-parse-inline-src-block-match).
2009-07-16 23:22:25 -04:00
