* lisp/ob-exp.el (org-babel-exp-non-block-elements): More accurate
white space handling when evaluating inline-src-block, babel-call and
inline-babel-call elements or objects. Also removed use of
`org-babel-examplize-region' since it would never be called anyway
(return value from `org-babel-exp-do-export' is never nil).
* lisp/ob-exp.el (org-export-blocks-preprocess): Improve blank lines
handling in function. Add comments. Remove
`org-export-blocks-postblock-hook' since it's defined nowhere
now (and doesn't need to, there's `org-export-before-parsing-hook'
already).
* lisp/org-exp-blocks.el: Delete file.
* lisp/ob-exp.el (org-export-blocks-preprocess): Moved from
"org-export-blocks.el".
* lisp/ob-ditaa.el (org-ditaa-jar-path): Moved from
"org-export-blocks.el".
* lisp/ob-exp.el (org-babel-exp-src-block): Remove unused argument.
(org-babel-exp-non-block-elements): Rewrite function using Org Element.
* lisp/org-exp-blocks.el (org-export-blocks-preprocess): Rewrite
function using Org Element.
* org.el (org-mode-map): Add keybindings to
`org-element-transpose' and `org-narrow-to-element'.
(org-metaup): Fall back on `org-element-drag-backward'.
(org-metadown): Fall back on `org-element-drag-forward'.
Also move chunks of declarations and require statements to
get rid of compiler warnings.
* org-exp-blocks.el (org): Don't require org. Add declarations.
* org-clock.el (org): Don't require org.
* ob-exp.el (org-list-forbidden-blocks): Add declarations.
* org.el (org-mode-map): Add keybindings to
`org-element-transpose' and `org-narrow-to-element'.
(org-metaup): Fall back on `org-element-drag-backward'.
(org-metadown): Fall back on `org-element-drag-forward'.
Also move chunks of declarations and require statements to
get rid of compiler warnings.
* org-exp-blocks.el (org): Don't require org. Add declarations.
* org-clock.el (org): Don't require org.
* ob-exp.el (org-list-forbidden-blocks): Add declarations.
This patch ensure Org-mode will build on all supported versions of
Emacs, after the renaming of the cl macros behind the cl- prefix in the
recent Emacs trunk.
* lisp/org-compat.el (org-flet): Compatibility function now that flet
has been removed from cl-macs.
(org-labels): Compatibility function now that labels has been removed
from cl-macs.
* lisp/ob-R.el (org-compat): Require org-compat.
* lisp/ob-comint.el: Require org-compat.
* lisp/ob-exp.el (org-babel-exp-do-export): Switch to compatibility
function.
* lisp/ob-gnuplot.el (org-babel-expand-body:gnuplot): Switch to
compatibility function.
* lisp/ob-lob.el (org-babel-lob-get-info): Switch to compatibility
function.
(org-babel-lob-execute): Switch to compatibility function.
* lisp/ob-python.el (org-babel-python-evaluate-session): Switch to
compatibility function.
* lisp/ob-ref.el (org-babel-ref-index-list): Switch to compatibility
function.
* lisp/ob-sh.el (org-babel-sh-var-to-string): Switch to compatibility
function.
* lisp/ob-tangle.el (org-babel-load-file): Switch to compatibility
function.
(org-babel-tangle): Switch to compatibility function.
(org-babel-spec-to-string): Switch to compatibility function.
* lisp/ob.el (org-babel-view-src-block-info): Switch to compatibility
function.
(org-babel-execute-src-block): Switch to compatibility function.
(org-babel-edit-distance): Switch to compatibility function.
(org-babel-switch-to-session-with-code): Switch to compatibility
function.
(org-babel-sha1-hash): Switch to compatibility function.
(org-babel-balanced-split): Switch to compatibility function.
(org-babel-join-splits-near-ch): Switch to compatibility function.
(org-babel-get-rownames): Switch to compatibility function.
(org-babel-format-result): Switch to compatibility function.
(org-babel-insert-result): Switch to compatibility function.
(org-babel-examplize-region): Switch to compatibility function.
(org-babel-merge-params): Switch to compatibility function.
(org-babel-noweb-p): Switch to compatibility function.
(org-babel-expand-noweb-references): Switch to compatibility function.
* lisp/org-bibtex.el (org-bibtex-headline): Switch to compatibility
function.
(org-bibtex-fleshout): Switch to compatibility function.
(org-bibtex-read): Switch to compatibility function.
(org-bibtex-write): Switch to compatibility function.
* lisp/org-exp-blocks.el (org-export-blocks-preprocess): Switch to
compatibility function.
* lisp/org-exp.el (org-export-format-source-code-or-example): Switch to
compatibility function.
* lisp/org-macs.el (org-called-interactively-p): Indentation fix.
* lisp/org-mouse.el (org-mouse-timestamp-today): Switch to compatibility
function.
(org-mouse-set-priority): Switch to compatibility function.
(org-mouse-popup-global-menu): Switch to compatibility function.
(org-mouse-context-menu): Switch to compatibility function.
* lisp/org-plot.el (org-plot/gnuplot-to-grid-data): Switch to
compatibility function.
(org-plot/gnuplot-script): Switch to compatibility function.
* lisp/org.el (org-entry-get): Switch to compatibility function.
(org-fill-paragraph): Switch to compatibility function.
(org-auto-fill-function): Switch to compatibility function.
* lisp/ob-exp.el (org-babel-exp-code): Escape all lines when exporting
Org-mode blocks.
* lisp/ob.el (org-babel-parse-src-block-match): Make use of the new
language argument to org-babel-strip-protective-commas.
(org-babel-parse-inline-src-block-match): Make use of the new
language argument to org-babel-strip-protective-commas.
(org-babel-strip-protective-commas): Now accepts a language
argument.
Conflicts:
lisp/ob-exp.el
* lisp/ob-exp.el (org-babel-exp-code): Escape all lines when exporting
Org-mode blocks.
* lisp/ob.el (org-babel-parse-src-block-match): Make use of the new
language argument to org-babel-strip-protective-commas.
(org-babel-parse-inline-src-block-match): Make use of the new
language argument to org-babel-strip-protective-commas.
(org-babel-strip-protective-commas): Now accepts a language
argument.
* lisp/ob-exp.el (org-babel-exp-src-block): Remove noweb handling from
the top level.
(org-babel-exp-code): Noweb handling for code export.
(org-babel-exp-results): Noweb handling for results export.
I started from the 78ec8e commit then cherry-picked and squashed
commits that have been done in master since then, except the bad
commits that overwrote the tree (in master) with the tree in maint.
This commit also bumps the version number to 7.8.06.
The only "fix" that was made between 78ec8e and the previous commit
is e0072f which has been reported to break stuff.
This fixes a wrong merge that should not have happened:
commit 7e903a merges the master branch into the maint branch,
while we really want to keep the maint branch a bugfix-only
branch.
This commit reverts back the maint branch to its state before
merging the master branch. From there, we will fix remaining
problems with the maint branch (e.g. copyright issues) then
release this maint branch as Org-mode 7.8.05.
* lisp/ob-exp.el (org-babel-exp-in-export-file,
org-babel-exp-src-block, org-babel-exp-inline-src-blocks): Allow
org-current-export-file to contain a buffer.
This allows to resolve references from a buffer not visiting any file
(i.e. a temporary buffer) during export process.
Conflicts:
lisp/ob-exp.el (org-babel-exp-in-export-file): Allow
org-current-export-file to contain a buffer name.
* lisp/ob-exp.el (org-babel-exp-call-line-template): Control export of
additional call line information.
(org-babel-exp-non-block-elements): Fancier call line export.
* testing/examples/babel.org (an): Example data to test new call line
export.
* testing/lisp/test-ob-exp.el (ob-exp/export-call-line-information):
Test new call line export.
* lisp/ob-exp.el (org-babel-exp-results): Alter a copy of info.
* testing/examples/babel.org (an): Example data for test behavior.
* testing/lisp/test-ob-exp.el (ob-exp/noweb-no-export-and-exports-both):
Confirm proper behavior.
* lisp/ob-exp.el (org-babel-exp-src-block): Use `org-babel-noweb-p'.
(org-babel-exp-inline-src-blocks): Use `org-babel-noweb-p'.
* lisp/ob-tangle.el (org-babel-tangle-collect-blocks): Use
`org-babel-noweb-p'.
* lisp/ob.el (org-babel-execute-src-block): Use `org-babel-noweb-p'.
(org-babel-expand-src-block): Use `org-babel-noweb-p'.
(org-babel-load-in-session): Use `org-babel-noweb-p'.
(org-babel-merge-params): Use `org-babel-noweb-p'.
(org-babel-noweb-p): New function used to determine if noweb
expansion should be carried out in a given context.
* lisp/ob-exp.el (org-babel-exp-lob-one-liners): Don't limit
in-verbatim check to inline code blocks, do lob code blocks as well.
* testing/lisp/test-ob-lob.el (test-ob-lob/do-not-eval-lob-lines-in-example-blocks-on-export):
Test ensuring that #+call lines in verbatim blocks are not evaluated
* lisp/ob-exp.el (org-babel-in-example-or-verbatim): Some valid
execution contexts (e.g., call lines) look like commented lines.
* lisp/ob.el (org-babel-get-src-block-info): Empty match string
doesn't count.
(org-babel-process-params): Always process parameters, even if you
don't to table splitting.
* testing/lisp/test-ob-C.el (ob-C/table): Ignore failures for this C
test.
* testing/lisp/test-ob-fortran.el (ob-fortran/input-var): Ignore
failures for this fortran test.
Nick Dokos <nicholas.dokos@hp.com> writes:
> Eric Schulte <schulte.eric@gmail.com> wrote:
>
>> The attached updated patch fixes a bug in the original.
>>
>
> Minor problem in applying:
>
> ,----
> | $ git apply ~/Mail/inbox/724
> | /home/nick/Mail/inbox/724:671: trailing whitespace.
> | #+name:
> | /home/nick/Mail/inbox/724:599: new blank line at EOF.
> | +
> | warning: 2 lines add whitespace errors.
> `----
The attached version fixes these issues, Thanks -- Eric
>From 0e43d59ee8d46a63f86780a502de726271bc39de Mon Sep 17 00:00:00 2001
From: Eric Schulte <schulte.eric@gmail.com>
Date: Fri, 28 Oct 2011 10:44:21 -0600
Subject: [PATCH] removing code block, results and call-line synonyms -- BREAKING CHANGE
Following a round of on-list discussion many code block synonyms have
been removed, moving forward the following syntax is valid.
- call lines are specified with #+call:
- code blocks are named with #+name:
- results are named with #+name:, however results generated by a code
block may still be labeled with #+results:, and tables named with
#+tblname: will be considered to be named results
The following function may be used to update an existing Org-mode
buffer to the new syntax.
(defun update-org-buffer ()
"Update an Org-mode buffer to the new data, code block and call line syntax."
(interactive)
(save-excursion
(flet ((to-re (lst) (concat "^[ \t]*#\\+" (regexp-opt lst t)
"\\(\\[\\([[:alnum:]]+\\)\\]\\)?\\:[ \t]*"))
(update (re new)
(goto-char (point-min))
(while (re-search-forward re nil t)
(replace-match new nil nil nil 1))))
(let ((old-re (to-re '("RESULTS" "DATA" "SRCNAME" "SOURCE")))
(lob-re (to-re '("LOB")))
(case-fold-search t))
(update old-re "name")
(update lob-re "call")))))
Note: If an old version of Org-mode (e.g., the one shipped with Emacs)
is installed on your system many of the important variables will
be pre-defined with a defvar and *will not* have their values
automatically updated, these include the following.
- org-babel-data-names
- org-babel-result-regexp
- org-babel-src-block-regexp
- org-babel-src-name-regexp
- org-babel-src-name-w-name-regexp
It may be necessary to either remove the source code of older
versions of Org-mode, or to explicitly evaluate the ob.el file.
* lisp/ob-exp.el (org-exp-res/src-name-cleanup): Updated
Documentation.
* lisp/ob-lob.el (org-babel-block-lob-one-liner-regexp): Updated
regular expression.
(org-babel-inline-lob-one-liner-regexp): Updated regular expression.
* lisp/ob-ref.el (org-babel-ref-resolve): Notice when something that
looks like a data results may actually be a code block.
* lisp/ob-table.el: Updated documentation.
* lisp/ob.el (org-babel-src-name-regexp): Simplified regexp.
(org-babel-get-src-block-info): Updated match strings.
(org-babel-data-names): Simplified acceptable names.
(org-babel-find-named-block): Indentation.
(org-babel-find-named-result): Updated to not return a code block as
a result.
* lisp/org.el (org-fontify-meta-lines-and-blocks-1): Removing
references to old syntactic elements.
(org-additional-option-like-keywords): Removing references to old
syntactic elements.
* contrib/babel/library-of-babel.org: Updated to make use of the new
syntax.
* testing/examples/babel-dangerous.org: Updated to make use of the new
syntax.
* testing/examples/babel.org: Updated to make use of the new syntax.
* testing/examples/ob-awk-test.org: Updated to make use of the new
syntax.
* testing/examples/ob-fortran-test.org: Updated to make use of the new
syntax.
* testing/lisp/test-ob.el: Removed two bad tests which tested the
literal values of old regular expressions rather than their
behavior.
* lisp/ob-lob.el (org-babel-lob-execute-maybe): Don't execute a call
inside a verbatim block.
* lisp/ob-exp.el (org-babel-in-example-or-verbatim): Check for example
blocks.
* lisp/ob-exp.el (org-babel-exp-inline-src-blocks): Save match data
around `org-babel-exp-do-export' which now searches in this case.
(org-babel-exp-results): Position the point in the inline source
block during export evaluation.
* lisp/ob.el (org-babel-insert-result): More readable code.
Also remove blank lines before the ";;; org*el ends here" declarations.
Having a "Version" header forced us to update every file when releasing a
new version of Org; it also forced us to update every file when merging Org
with Emacs trunk, thus cluttering the diffs between the previously merged
version and the new one with useless information.
Glenn Morris suggested this in emacs-devel:
http://lists.gnu.org/archive/html/emacs-devel/2011-08/msg00322.html
* lisp/org.el (org-between-regexps-p): previous name implied the
function was related to blocks, which isn't mandatory.
(org-narrow-to-block, org-in-block-p, org-indent-line-function):
applied the rename.
* lisp/ob-exp.el (org-babel-in-example-or-verbatim): applied
rename. Also removed a white space.
* lisp/ob-exp.el (org-babel-exp-results): Resolve hashes in the
current (not original) file buffer.
* lisp/ob.el (org-babel-current-result-hash): More informative name,
and remove useless optional argument.
* lisp/ob-exp.el (org-babel-in-example-or-verbatim): Also check for in
verbatim emphasis.
(org-babel-exp-lob-one-liners): Cleaner checking for escaped call
lines.
* lisp/ob-exp.el (org-babel-exp-lob-one-liners): Calculate length
appropriately given the style (block or inline) of the lob line.
* lisp/ob-lob.el (org-babel-block-lob-one-liner-regexp): New regexp
specific for block lob lines.
(org-babel-inline-lob-one-liner-regexp): New regexp specific for
inline lob lines.
(org-babel-lob-one-liner-regexp): Combination of two lob regexps.
(org-babel-lob-get-info): Return info from *either* the block or
inline lob lines.
* lisp/ob-exp.el (org-babel-exp-lob-one-liners): Corrected the
structure of the resulting info list.
* lisp/ob-lob.el (org-babel-default-lob-header-args): Export the
results of call lines by default.
* lisp/ob-exp.el (org-babel-exp-do-export): Use `org-babel-exp-code'
to generate code block output.
(org-babel-exp-code): Re-create the code block body for exporting
source code.
* lisp/ob-exp.el (org-babel-exp-in-export-file): Now takes the
language as an argument.
(org-babel-exp-src-block): Explicitly pass language to
`org-babel-exp-in-export-file'.
(org-babel-exp-inline-src-blocks): Removed unused code.
(org-babel-exp-results): Explicitly pass language to
`org-babel-exp-in-export-file'.
* lisp/ob.el (org-babel-library-of-babel): declare variable
(org-babel-tangle-comment-links): declare function
- calling org-babel-process-params on the parameters before the hash
is calculated
- calculating the hash before the noweb references are expanded
* lisp/ob-exp.el (org-babel-exp-src-block): When block will eventually
be evaluated, pre-calculate the hash before noweb expansion, and
expand the parameters before hash calculation.
(org-babel-exp-do-export): Pass pre-calculated hash through to
`org-babel-exp-results'.
(org-babel-exp-results): Compare pre-calculated hash to results hash.
* lisp/ob-exp.el (org-babel-exp-do-export): Simplified, no longer need
to do anything to export code.
(org-babel-exp-results): No longer returns a replacement for the
code block.
(org-babel-exp-inline-src-blocks): Simplified.
(org-babel-exp-src-block): Removed unnecessary pluralization from
function name.
* lisp/ob-exp.el (org-babel-exp-inline-src-blocks): Simplified
exportation of inline code blocks using normal code block execution
mechanism to insert results.
(org-babel-exp-results): Results exportation mechanism is unified
for both inline and regular code blocks.
* lisp/ob.el (org-babel-where-is-src-block-result): Returns the point
after an inline code block for inline code blocks.
* lisp/ob-eval.el (org-babel-error-buffer-name): Define new variable.
(org-babel-eval-error-notify): Use new variable `org-babel-error-buffer-name'
(org-babel-eval): Make temp error buffer invisible to the user with
initial space in name.
(org-babel-eval-wipe-error-buffer): New function to wipe the error message buffer.
* lisp/ob-exp.el (org-babel-eval-wipe-error-buffer): Declare external function
`org-babel-eval-wipe-error-buffer'.
(org-babel-exp-results): Wipe error buffer clean at outset of execution
* lisp/ob.el (org-babel-execute-src-block-maybe): Wipe error buffer clean at
outset of execution
(org-babel-eval-wipe-error-buffer): Declare external function
`org-babel-eval-wipe-error-buffer'.
* lisp/ob-lob.el (org-babel-lob-get-info): including pass-through
header arguments in results variable header argument string
* lisp/ob.el (org-babel-execute-src-block): working with new header
argument setup
(org-babel-parse-header-arguments): only split header argument
strings when []'s are balanced
* lisp/ob-exp.el (org-babel-exp-results): replaced old function call
* lisp/ob-lob.el (org-babel-lob-execute): replaced old function call
* lisp/ob-ref.el (org-babel-ref-parse): removed obsolete optional
params argument, also no longer chokes when handed an
already-resolved reference
(org-babel-ref-resolve): removed obsolete optional params argument
* lisp/ob.el (org-babel-ref-parse): updated function declaration
(org-babel-get-src-block-info): replaced old function call
(org-babel-header-arg-names): indentation
(org-babel-execute-src-block): now expanding all parameters using
the newly combined org-babel-process-params
(org-babel-switch-to-session-with-code): indentation
(org-mode-hook): indentation
(org-babel-process-params): now packages all results into the
parameter alist and does variable expansion, this should no longer
be called from inside of language functions
(org-babel-expand-noweb-references): updated function call for newly
removed obsolete function parameter
includes a simple export test
* lisp/ob-exp.el (org-babel-exp-in-export-file): wrapper for
collecting information from within the original export file
(org-babel-exp-src-blocks): simplified through use of the above
macro
(org-babel-exp-code): simplified through the use of new functions
for parsing header arguments
(org-babel-exp-results): simpler high-level organization, also this
is now where the expansion of variable references takes place during
export
* lisp/ob.el (org-babel-expand-variables): broke variable replacement
in a parameter list into it's own function
(org-babel-get-src-block-info): now using the above function
Thanks to Puneeth for insisting upon the existence of this error
* lisp/ob-exp.el (org-babel-exp-src-blocks): don't jump back to
export-file if exporting from a buffer which is not visiting a file
Thanks to Giovanni Moretti for pointing out this issue
* lisp/ob-exp.el (org-babel-exp-src-blocks): only append "::" to a
file name in link construction if there is a heading to follow it.
* lisp/ob-exp.el (org-babel-exp-src-blocks): now switching back to the
original file before resolving code block parameters to ensure
headline and buffer wide parameters are taken into consideration
when only a narrowed portion of the file is exported
this makes it possible to export while not evaluating some code
blocks
* lisp/ob-exp.el (org-babel-exp-do-export): removing hacky ":noeval",
which is now an alias to ":eval no"
* lisp/ob.el (org-babel-confirm-evaluate): ":noeval" is an alias for
":eval no", also no longer throwing errors
(org-babel-header-arg-names): adding both eval and noeval as general
header arguments
(org-babel-execute-src-block): now using the new non-error
confirmation functionality
Thanks for Nicolas Goaziou for pointing this out
* lisp/ob-exp.el (org-babel-exp-src-blocks): don't attempt to export
blocks when there is no info match -- this fixes a bug in the latex
export of code blocks located before the first headline
Thanks to Austin Frank for suggesting these features and to Jonathan
Arkell for an implementation suggestion
This commit
- adds `org-babel-goto-named-result' for jumping to named results
- adds TAB-completion to `org-babel-goto-named-src-block'
- standardizes on "-src-" instead of "-source-" in all babel functions
- adds `org-babel-[next/previous]-src-block' functions and keybindings
- documents the above in orgcard.tex
* doc/orgcard.tex: update documentation of babel keybindings
* lisp/ob-exp.el (org-exp-res/src-name-cleanup): standardized on
"-src-" instead of "-source-"
* lisp/ob-keys.el (org-babel-key-bindings): updating keybindings for
new movement functions
* lisp/ob-lob.el (org-babel-lob-ingest): standardized on "-src-"
instead of "-source-"
* lisp/ob-ref.el (org-babel-ref-resolve-reference): standardized on
"-src-" instead of "-source-"
* lisp/ob-tangle.el (org-babel-tangle-collect-blocks): standardized on
"-src-" instead of "-source-"
* lisp/ob.el (org-babel-src-name-regexp): standardized on "-src-"
instead of "-source-"
(org-babel-src-name-w-name-regexp): adding regexp for matching
source names along with their names
(org-babel-get-src-block-info): using new named source block regexp
(org-babel-result-regexp): adding optional whitespace after result
regexp
(org-babel-result-w-name-regexp): adding regexp for matching results
which have names
(org-babel-named-src-block-regexp-for-name): standardized on "-src-"
instead of "-source-"
(org-babel-map-src-blocks): standardized on "-src-" instead of
"-source-"
(org-babel-where-is-src-block-head): standardized on "-src-" instead of
"-source-"
(org-babel-goto-named-src-block): standardized on "-src-" instead of
"-source-", also added completing read
(org-babel-src-block-names): collects source block names from a file
or the current buffer
(org-babel-goto-named-result): function for jumping to a named
result
(org-babel-result-names): returns results names from a file or the
current buffer
(org-babel-next-src-block): jump to the next source block
(org-babel-previous-src-block): jump to the previous source block
* lisp/ob-exp.el (org-export-babel-evaluate): customization variable
which can be used to inhibit the evaluation of code blocks on export
(org-babel-exp-results): code block evaluation is now contingent on
the value of org-export-babel-evaluate
Nicolas Goaziou
Bastien Guerry
Achim Gratz
Eric Schulte
Jérémy Compostella
Eric Schulte
Nick Dokos
David Maus
emacs
Robert P. Goldman
Dan Davison
Carsten Dominik
Dan Davison
Tom Dye