* lisp/ob-core.el (org-babel--expand-body): New function.
(org-babel-check-confirm-evaluate):
(org-babel-execute-src-block): Use org-babel--expand-body.
As of 727c6d7fe (lisp/ob-core.el: org-babel-check-confirm-evaluate
strip coderefs, 2020-09-04), org-babel-check-confirm-evaluate and
org-babel-execute-src-block use the same logic to expand the body and
strip coderefs. Move that code to a helper function.
This patch is functionally equivalent to the patch originally proposed
by Tom Gillespie at
https://orgmode.org/list/CA+G3_PNi3uMvBiWgBdKuC3C6VJt1T1j-RKH43LRqYbr+4NS8ZA@mail.gmail.com
* lisp/ob-core.el (org-babel-check-confirm-evaluate): strip coderefs
before passing the body of the block to org-confirm-babel-evaluate
using the same let block as is used in org-babel-execute-src-block.
* lisp/org.el (org-read-date-display-live): Document that live
display is only available when `org-read-date-popup-calendar' is
non-nil.
See <https://orgmod.org/list/20200630180259.zj3krk57x5iqmbsj@orion>
Reported-by: Edmund Christian Herenz <eherenz@eso.org>
* lisp/ob-core.el (org-babel-result-to-file): Use
`buffer-base-buffer' so that `buffer-file-name' returns correct
results in indirect buffers too.
See <https://orgmode.org/list/87eeos3w7v.fsf@localhost>
TINYCHANGE
* lisp/org-capture.el (org-capture-finalize): Update
`org-capture-plist' with local-value before finalizing.
We use the global-variable `org-capture-plist' to populate the
local-variable `org-capture-current-plist' on the init of the
`org-capture' buffer. However, we do not do the opposite (i.e. update
the global-variable with the local-variable) on
`org-capture-finalize'.
This is fine for the majority of `org-capture-finalize', since we’re
using the LOCAL arg of `org-capture-get' to read
`org-capture-current-plist' instead of `org-capture-list', but this
trick does not work for `org-capture-after-finalize', since the hook
is run after the `org-capture-buffer' has been closed.
This causes problem with `:kill-buffer t', and it limits what can be
done with cleanup functions in `org-capture-after-finalize'.
See <https://orgmode.org/list/87h7tv9pkm.fsf@hidden/> for details.
* lisp/org.el (org-make-tags-matcher): Add a parameter to make it
optional to include non-buffer tags.
(org-match-sparse-tree): Use the new parameter.
TINYCHANGE
* lisp/ox-odt.el (org-odt--translate-latex-fragments):
* lisp/ox-html.el (org-html--format-image): Use
`org-preview-latex-image-directory' instead of hardcoding the
directory name.
See <https://orgmode.org/list/87a70v9jan.fsf@ucl.ac.uk>
Reported-by: Eric S Fraga <e.fraga@ucl.ac.uk>
* lisp/org-goto.el (org-goto-location): Call make-indirect-buffer with
a non-nil CLONE to preserve the base buffer's state, avoiding a more
expensive call to org-mode.
Reported-by: Vladimir Nikishkin <lockywolf@gmail.com>
Suggested-by: Ihor Radchenko <yantar92@gmail.com>
* lisp/ob-python.el (py-shell-send-string): Remove unneeded
declare-function.
(org-babel-python-eoe-indicator): Add back this const.
(org-babel-python--eval-ast): Fix spacing so the block can be entered
line by line into the interpreter.
(org-babel-python-evaluate-session): Revert previous changes to
evaluation for value results.
* testing/lisp/test-ob-python.el (test-ob-python/session-value-sleep):
New test for session blocks that don't return immediately.
632ceabb1 introduced a bug where session blocks don't wait for value
results if not returned immediately. This reverts part of that
commit, specifically for evaluation of session blocks with value
results. It leaves other parts of that commit alone, for example the
changes to session output results, which is more robust handling
prompts from ipython interpreter.
A downside of reverting the session value implementation is that the
ugly code from org-babel-python--eval-ast is again printed in the
console, but this is less bad than the new bug that was introduced by
the change, hence reverted.
* lisp/ol.el (org-store-link): Store link with CUSTOM_ID anchor
in indirect buffer.
(org-insert-link): Do not add file name to search and CUSTOM_ID
links pointed to the same file when called from indirect buffer.
When a subtree was open in an indirect buffer, wrong argument
of `abbreviate-file-name' prevented storing link to a CUSTOM_ID
anchor. Internal link to a header line or to a CUSTOM_ID anchor
was created with file name instead of concise form.
This is a follow up of 784e5f1488.
TINYCHANGE
* lisp/ob-plantuml (org-babel-variable-assignments:plantuml): Support
using plantuml executable instead of jar.
Some systems come with an executable for plantuml instead of a specific
JAR file. This adds support for two different modes:
- jar :: using java together with a JAR (previous behavior)
- plantuml :: using a PlantUML executable
The PlantUML executable can be configured via
`org-plantuml-executable-path` and also the arguments that will be given
via `org-plantuml-executable-args`.
* lisp/ob-J.el (org-babel-execute:J, org-babel-J-eval-string): Add
customizability.
(org-babel-execute:J): Lookup optional parameter `:sit' to allow one
to wait for a specified amount of time before grabbing the output of
the J subprocess. Pass this specified value or the previous default
of .1 to `org-babel-J-eval-string'.
(org-babel-eval-string): Pass new argument `sit-time' to `sit-for'
before grabbing output.
The problem is that we read the contents of the output after 0.1
seconds, which, for expensive computations, results in the mangling of
output. Output from expensive computations gets propagated down to
subsequent code-blocks' outputs, producing a horrible mess.
TINYCHANGE
* lisp/ob-core.el (org-babel-import-elisp-from-file): Don't try to
convert empty file to a table.
* testing/lisp/test-ob.el (test-ob/import-elisp-from-file): Add tests.
If org-babel-import-elisp-from-file is called with an empty file
(which many ob- libraries do when there are no results), feeding that
to org-table-import leads to a beginning-of-buffer error. Before
14878f3f9 (ob-core: Display warning on failure to read results,
2020-05-21), this error was hard to notice because, after catching it,
it was reported as a quickly buried message. After that commit, it is
displayed as a warning, which is not appropriate for the common and
unproblematic case of empty results.
Avoid the warning by only doing the table conversion if the file has
content. Another option would be to do the table conversion but add a
beginning-of-buffer arm to the surrounding condition-case. However,
that risks swallowing other sources of that error.
Reported-by: Colin Baxter <m43cap@yandex.com>
<https://orgmode.org/list/878se3nhbj.fsf@yandex.com>
* lisp/ob-python.el: Require python.el at top-level.
(org-babel-python-eoe-indicator): Remove unused variable.
(org-babel-python-initiate-session-by-key): Rename
python-buffer to avoid obsolete warning.
(org-babel-python-evaluate-external-process): Remove unnecessary
require.
(org-babel-python--exec-tmpfile): Simplify this template.
(org-babel-python--eval-ast): Add printing of results to this
template, requiring additional string escapes.
(org-babel-python-evaluate-session): Simplify to use adjusted
templates, and call out to functionality in python.el or
python-mode.el.
(org-babel-python-evaluate-session): Simplified to use adjusted templates.
This commit refactors and cleans up code related to session
evaluation. python.el is now required at the top-level. Python
templates for wrapping code are simplified. Instead of directly
pasting code to the REPL, functionality from python.el and
python-mode.el are used; this fixes issues with code being echoed to
the REPL, and should be generally more robust. Finally, in the
:results value case, special handling of exceptions is removed, and we
no longer print None when the last statement isn't an expression.
* lisp/ob-python.el (org-babel-python-evaluate-session): Fix
discrepancy between how single-line and multiline code blocks return
output.
For example, before this commit, the 2 blocks behaved differently:
+begin_src python :session :results output
pass
"foo"
+end_src
+RESULTS:
+begin_src python :session :results output
"foo"
+end_src
+RESULTS:
: 'foo'
But now, they both behave as the former.
* lisp/org-num.el (org-num--skip-value): Handle empty headlines.
This happens when org-num-skip-commented is non-nil. When creating
a new headline, often org-num--skip-value is invoked before any
headline text is created. This means that ‘title‘ is nil and the
string-match check breaks. Checking if title is non-nil fixes this.
TINYCHANGE
* lisp/org-clock.el (org-clock-sum-current-item): Do not include
clocked time from the parent when inside inlinetask.
Calling `org-narrow-to-subtree' from inside inlinetask would narrow to
the parent's subtree (correct behaviour). However, it is not what we
want when calculating the clocking sum. Inlinetask case should be
treated specially.
This fixes a bug in set-tags-command excluding a tag that is both set
locally and inherited from the initial minibuffer input by modifying
org-get-tags to prefer keeping the locally set tag over the inherited
tag, as this behavior is more intuitive for org-get-tags anyway.
* lisp/org.el (org-get-tags): Keep local tags over inherited.
* testing/lisp/test-org.el (test-org/set-tags-command): Add test.
* lisp/ob-python.el (org-babel-python-evaluate-session): Process
temporary file name with `org-babel-process-file-name' before
inserting it into code Python code snippets.
Before this change, the entire temporary filename was sent to the
Python session for execution, causing a 'No such file' error when the
filename had a Tramp format such as
/ssh:user@server:/tmp/python-ABCDEF.
TINYCHANGE
* lisp/org.el (org-get-cursor-date): Fix regular expression.
Previous regular expression assumed the time grid string will have two
digits in the hour portion of the time string. However, the time grid
string does not always have two digits. For example:
" 8:00......"
* lisp/org-faces.el (org-block): Set background extension beyond
end-of-line.
* lisp/org-compat.el (org--set-faces-extend): New function to
temporarily (re)set :extend for Emacs≥27.
* lisp/org.el (org-mode): Call it to set the extend attribute of
relevant faces to the correct value.
* ob-core.el (org-babel-execute-src-block): Source code block header
argument `:file-mode' can set file permissions if `:file' argument is
provided.
(org-babel-common-header-args-w-values): Add `:file-mode' to common
header arguments.
TINYCHANGE
* lisp/ob-core.el (org-babel-check-confirm-evaluate): Expand noweb
references in the body passed to org-confirm-babel-evaluate.
* testing/lisp/test-ob.el (test-ob/check-eval-noweb-expanded): New
test.
When noweb references are set to be expanded for evaluation,
org-confirm-babel-evaluate should receive the expanded body so that it
can make its decision based on what actually will be evaluated
(without resorting to calling org-babel-get-src-block-info itself).
Note that this results in up to three calls to
org-babel-expand-noweb-references. Possible ways to avoid this are
discussed at the thread referenced below.
Reported-by: Tom Gillespie <tgbugs@gmail.com>
https://orgmode.org/list/CA+G3_PNi3uMvBiWgBdKuC3C6VJt1T1j-RKH43LRqYbr+4NS8ZA@mail.gmail.com/
* lisp/ob-screen.el (org-babel-screen-session-socketname): Quote
session name before giving it to string-match because the name may
have regexp characters.
While touching the line, make two cosmetic tweaks.
* lisp/ob-screen.el (org-babel-default-header-args:screen): Add
default header argument `:screenrc' and value "/dev/null".
(org-babel-prep-session:screen): Use header argument in variable
`screenrc' and not hard-coded value.
* lisp/ob-screen.el (org-babel-prep-session:screen): Remove concat of
"org-babel-session-" string onto session name when creating session.
(org-babel-screen-session-socketname): Remove concat of
"org-babel-session-" string onto session name searching for existing
screen session.
* lisp/org.el (org-fill-paragraph): Do not fill paragraph before
region.
* testing/lisp/test-org.el (test-org/fill-paragraph): Add test.
Reported-by: Matt Lundin <mdl@imapmail.org>
<http://lists.gnu.org/r/emacs-orgmode/2020-07/msg00164.html>
* lisp/org-agenda.el (org-agenda-filter-by-effort):
(org-agenda-filter-completion-function): Ignore case when querying
effort property key in org-global-properties since property keys are
documented as case-insensitive.
* lisp/org.el (org-buffer-property-keys): Enhance the completion list
with property names from #+PROPERTY keywords, not just property
drawers. Also, for each xxx_ALL property, make sure that the bare xxx
property is added too.
* testing/lisp/test-org.el (test-org/buffer-property-keys): Add test
cases for #+PROPERTY keywords and also for xxx_ALL --> xxx properties.
See https://emacs.stackexchange.com/questions/59448/ for details.
Modified-by: Kyle Meyer <kyle@kyleam.com>
Cosmetic tweaks to _ALL stripping.
* lisp/org.el (org-ctrl-c-tab): Don't move point when acting on
outline level 0 (which is before first heading). This is consistent to
the behavior for level > 0. And refactor some. And correct the
docstring.
* lisp/org.el (org-show-entry): Before first heading show the region
up to the first heading. Remove the now useless ignore-errors.
This behavior allows to reveal invisible text before the first
heading.
* lisp/org-id.el (org-id-update-id-locations): When
`org-id-extra-files' is a symbol, it should be evaluated as a
variable.
In 9865e6bd8be65229be4eac4f459f62e47fab2be737a5020bb,
`org-id-update-id-locations' was rewritten, and the functionality to
allow the variable `org-id-extra-files' to be a symbol that references
another variable was removed. This change restores that
functionality.
* lisp/org-agenda.el (org-agenda-finalize): Call the hooks after the
save-excursion.
This opens the way for hooks to position the cursor after agenda
generation.
