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Author SHA1 Message Date
Eric Schulte 8605c848bf Merge branch 'master' into library-of-babel 
Conflicts:
	lisp/org-babel-ref.el
	org-babel.org
 2009-06-14 15:24:41 -07:00
Eric Schulte fb995f252c Merge branch 'master' into session 
Conflicts:
	lisp/org-babel-R.el
	org-babel.org
 2009-06-14 15:11:48 -07:00
Eric Schulte d72b438f5e Library of Babel source blocks are now available from any org-mode file 2009-06-14 15:01:55 -07:00
Eric Schulte f1302d1cca implemented *much* simpler lob one-liner syntax 2009-06-14 14:18:58 -07:00
Eric Schulte fb2dcaf58a implemented infrastructure for loading source-blocks from files 2009-06-14 14:10:04 -07:00
Eric Schulte 9040c8d246 re-organizing and re-categorizing TODOs under the task section 2009-06-14 12:36:46 -07:00
Eric Schulte 66d9bd1fb6 replies to new bugs 2009-06-14 12:22:11 -07:00
Eric Schulte 0866961436 Merge branch 'session' of git@github.com:eschulte/org-babel into session 
Conflicts:
	lisp/langs/org-babel-sh.el
	org-babel.org
 2009-06-14 12:16:17 -07:00
Eric Schulte 8360a676b9 passing all tests 2009-06-14 12:09:36 -07:00
Eric Schulte a85cadced8 *** DONE function to bring up inferior-process buffer [4/4] 2009-06-14 12:02:25 -07:00
Eric Schulte 4fd1abecc5 move lisp/langs/org-babel-shell.el to lisp/langs/org-babel-sh.el 2009-06-14 11:54:31 -07:00
Eric Schulte e962e83741 adding pop/prep session commands to org-babel-shell.el 2009-06-14 11:53:56 -07:00
Eric Schulte 88048186ac R know how to prep and pop-to sessions 2009-06-14 11:48:11 -07:00
Eric Schulte f2444e39e9 added some `sit-for' statements to make ruby inf session prep more reliable 2009-06-14 11:44:29 -07:00
Dan Davison 70cc6cb90f A couple of bug reports. 
(1) Shell evaluation is broken by weird escape chars in prompt;
(2) ruby evaluation not working for me as run-ruby expects one argument on my system.

Also fixed a harmless copy-paste error and whitespace adjustment to shorten lines.
 2009-06-14 14:38:15 -04:00
Eric Schulte 2212742c54 python can now pop-to-session 2009-06-14 11:34:06 -07:00
Eric Schulte d1bcb5e425 cleaned version of body is now added to kill ring 2009-06-14 11:10:09 -07:00
Eric Schulte 1b39a64fbe ruby blocks can now pop to session buffer (optionally evaluating header-args) 2009-06-14 11:08:12 -07:00
Eric Schulte 5e41083bfa adding ** TODO add =:none= session argument (for purely functional execution) 2009-06-14 10:32:10 -07:00
Eric Schulte 7d063efd28 removed debugging statement from org-babel.el 2009-06-14 10:27:29 -07:00
Eric Schulte 77c8f29968 ** DONE test failing forcing vector results with =test-forced-vector-results= ruby code block 2009-06-14 10:24:29 -07:00
Eric Schulte 0019cc9c14 all tests seem to be passing 2009-06-14 10:23:44 -07:00
Eric Schulte ba2756447d correctly using the ARTIFICIAL flag with comint-send-input 2009-06-14 10:21:14 -07:00
Eric Schulte 3cd99d0c2f ** DONE defunct R sessions 
turns out I just had to use inferior-ess-send-input instead of comint-send-input
 2009-06-14 10:20:59 -07:00
Eric Schulte bf2b175ba8 fleshing out bug description 2009-06-14 10:05:26 -07:00
Eric Schulte 4a4046d73d adding two bugs... 
** TODO defunct R sessions
** TODO test failing forcing vector results with =test-forced-vector-results= ruby code block
 2009-06-14 09:22:31 -07:00
Eric Schulte d879ac0a12 seems to have passed all tests (I'm skeptical there still may be problems) 
Specifically with the following two issues...
  1) hanging on R code blocks when we have multiple R sessions in play
  2) very occasionally the results of ruby code blocks are iffy

This whole session experience proves the general point that functional
code is easier to write and debug than code with state.
 2009-06-14 09:18:42 -07:00
Eric Schulte f31b3b2af2 fixed problem with new ruby sessions sometimes not initializing 2009-06-14 09:12:19 -07:00
Eric Schulte 8931657abf adding bug: TODO ruby fails on first call to non-default session 2009-06-14 08:42:35 -07:00
Eric Schulte 0b75d89ccf fixed error parsing empty results from ruby 2009-06-14 08:41:52 -07:00
Eric Schulte 82e9587c72 added alternate single-line syntax for Library of Babel evaluation 2009-06-14 07:54:55 -07:00
Dan Davison 04be81dfe4 Cleaner implementation of org-babel-execute:babel. 
It now searches for a srcname first in the current buffer, and then in
the lob.
 2009-06-14 01:11:04 -04:00
Dan Davison 66b27cb951 Added get-all-src-block-infos, which creates a hash of the 'info' lists 
for all source blocks in a buffer, keyed by srcname.
 2009-06-14 01:08:27 -04:00
Dan Davison 81ee8944ae Correcting errors in previously untested code. 2009-06-13 22:48:44 -04:00
Eric Schulte 08f92aebe5 passing some session tests, but still failing some tests 2009-06-13 19:35:48 -07:00
Eric Schulte 391f677fc7 `org-babel-comint-with-output' is now robust to errors 2009-06-13 18:28:06 -07:00
Eric Schulte da08c26d33 applying org-babel-comint-with-output macro to org-babel-shell.el 2009-06-13 17:39:19 -07:00
Eric Schulte 7d1cbd43ea removing debugging statements from org-babel-ref.el 2009-06-13 17:35:39 -07:00
Eric Schulte cd5fb8460d slightly more graceful use of let* 2009-06-13 17:35:01 -07:00
Eric Schulte e39b5e848e applying org-babel-comint-with-output macro to org-babel-R.el 2009-06-13 17:34:51 -07:00
Eric Schulte f4a1193a6e now using org-babel-comint-with-output in org-babel-python.el 2009-06-13 17:30:02 -07:00
Eric Schulte 47810f8e14 references to #+resname lines are now working 2009-06-13 17:08:43 -07:00
Eric Schulte dd0392a4f2 extracted the "capture all output from comint session" behavior into a macro 2009-06-13 17:08:42 -07:00
Dan Davison 6f9985a749 Synching org-babel.org across branches 2009-06-13 19:01:06 -04:00
Dan Davison b3afff4392 Merge branch 'session' into library-of-babel 2009-06-13 18:57:34 -04:00
Dan Davison f1ba541bf3 Updated notes on implementation of library functions. 2009-06-13 18:52:37 -04:00
Dan Davison b300b62b9c OK, I'm getting confused in magit and committing only a single hunk 
when I intended several. Hence, the commit note for this commit is the
commit note filed with the previous commit: da82dae939
 2009-06-13 18:51:23 -04:00
Dan Davison da82dae939 Implementing library functions as a new (pseudo) interpreter called 
'babel'. Added a speculative function which creates a hash table
containing parsed versions of all source blocks in a buffer -- I was
wondering whether we should 'load' the library-of-babel into memory in
this fashion, rather than searching for code blocks in buffers /
files.
 2009-06-13 18:49:24 -04:00
Dan Davison 317a062a9a New variable org-babel-named-src-block-regexp to match src block with 
srcname, and function org-babel-named-src-block-regexp-for-name
returning regexp matching a block with a particular
name. org-babel-named-src-block-regexp is set by
org-babel-set-interpreters.
 2009-06-13 18:46:26 -04:00
Dan Davison e0909d8458 New variable org-babel-named-src-block-regexp, to match a block with its srcname, and simple version of function org-babel-find-named-block. 2009-06-13 18:43:24 -04:00