forked from mirrors/org-mode
4985075c28
the results are in existing_tools/exp-blocks/example-for-r.html. To
get this working I had to make two changes...
First in testing.Rorg, I changed every block as follows
from
#+BEGIN_R:
#+END_R
to
#+BEGIN_R
#+END_R
Second I fixed a broken regexp in org-exp-blocks.el
This is capable of running calculations on the R blocks and the inline
\R{} segments, but is not yet able to handle the image generation
commands.
277 lines
6.6 KiB
HTML
277 lines
6.6 KiB
HTML
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml"
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lang="en" xml:lang="en">
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<head>
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<title>testing</title>
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<meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1"/>
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<meta name="generator" content="Org-mode"/>
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<meta name="generated" content="2009-02-05 15:41:29 PST"/>
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<meta name="author" content="Eric Schulte"/>
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<style type="text/css">
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<!--/*--><![CDATA[/*><!--*/
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html { font-family: Times, serif; font-size: 12pt; }
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.title { text-align: center; }
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.todo { color: red; }
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.done { color: green; }
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.tag { background-color:lightblue; font-weight:normal }
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.target { }
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.timestamp { color: grey }
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.timestamp-kwd { color: CadetBlue }
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p.verse { margin-left: 3% }
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pre {
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border: 1pt solid #AEBDCC;
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background-color: #F3F5F7;
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padding: 5pt;
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font-family: courier, monospace;
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font-size: 90%;
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overflow:auto;
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}
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table { border-collapse: collapse; }
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td, th { vertical-align: top; }
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dt { font-weight: bold; }
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div.figure { padding: 0.5em; }
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div.figure p { text-align: center; }
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.linenr { font-size:smaller }
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.code-highlighted {background-color:#ffff00;}
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.org-info-js_info-navigation { border-style:none; }
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#org-info-js_console-label { font-size:10px; font-weight:bold;
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white-space:nowrap; }
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.org-info-js_search-highlight {background-color:#ffff00; color:#000000;
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font-weight:bold; }
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/*]]>*/-->
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</style>
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<script type="text/javascript">
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<!--/*--><![CDATA[/*><!--*/
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function CodeHighlightOn(elem, id)
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{
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var target = document.getElementById(id);
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if(null != target) {
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elem.cacheClassElem = elem.className;
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elem.cacheClassTarget = target.className;
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target.className = "code-highlighted";
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elem.className = "code-highlighted";
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}
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}
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function CodeHighlightOff(elem, id)
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{
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var target = document.getElementById(id);
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if(elem.cacheClassElem)
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elem.className = elem.cacheClassElem;
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if(elem.cacheClassTarget)
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target.className = elem.cacheClassTarget;
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}
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/*]]>*/-->
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</script>
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</head><body>
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<h1 class="title">testing</h1>
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<div id="table-of-contents">
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<h2>Table of Contents</h2>
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<div id="text-table-of-contents">
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<ul>
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<li><a href="#sec-1">1 Sweave and org-mode </a>
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<ul>
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<li><a href="#sec-1.1">1.1 Use the Sweave package for latex formatting </a></li>
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<li><a href="#sec-1.2">1.2 R blocks </a>
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<ul>
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<li><a href="#sec-1.2.1">1.2.1 R code that is not printed </a></li>
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<li><a href="#sec-1.2.2">1.2.2 R code that is printed </a></li>
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<li><a href="#sec-1.2.3">1.2.3 R code that references other blocks </a></li>
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</ul>
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</li>
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<li><a href="#sec-1.3">1.3 Inline references to R data </a>
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<ul>
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<li><a href="#sec-1.3.1">1.3.1 Used in text </a></li>
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<li><a href="#sec-1.3.2">1.3.2 Used in a table </a></li>
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</ul>
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</li>
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<li><a href="#sec-1.4">1.4 Single-line R commands </a></li>
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<li><a href="#sec-1.5">1.5 Graphics </a></li>
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</ul>
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</li>
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</ul>
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</div>
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</div>
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<div id="outline-container-1" class="outline-2">
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<h2 id="sec-1">1 Sweave and org-mode </h2>
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<div id="text-1">
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<p>If you're reading a PDF version of this document, you should also
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look at <a href="testing.Rorg">testing.Rorg</a> (the source file) and <a href="testing.html">testing.org</a> (the output
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of the Sweave process).
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</p>
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<p>
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Keep in mind that one of the advantages of a block-based approach is
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using \texttt{C-'} to edit code in its native mode.
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</p>
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</div>
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<div id="outline-container-1.1" class="outline-3">
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<h3 id="sec-1.1">1.1 Use the Sweave package for latex formatting </h3>
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<div id="text-1.1">
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<p>Org allows us to issue commands to be included in \{LaTeX} export.
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</p>
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</div>
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</div>
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<div id="outline-container-1.2" class="outline-3">
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<h3 id="sec-1.2">1.2 R blocks </h3>
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<div id="text-1.2">
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<p>The first argument to an R block when using Sweave is the label for
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that block.
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</p>
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<p>
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Not all R blocks are printed. Sweave options allow the printing of
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the evaluated code, the output of the code, both, or neither.
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</p>
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</div>
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<div id="outline-container-1.2.1" class="outline-4">
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<h4 id="sec-1.2.1">1.2.1 R code that is not printed </h4>
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<div id="text-1.2.1">
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<div id="R-1">
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<pre>
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> a <- 3
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> b <- 6
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</pre>
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</div>
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</div>
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</div>
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<div id="outline-container-1.2.2" class="outline-4">
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<h4 id="sec-1.2.2">1.2.2 R code that is printed </h4>
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<div id="text-1.2.2">
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<div id="R-2">
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<pre>
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> c <- 4
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</pre>
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</div>
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<p>
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We can use block labels to embed blocks by reference (even if they
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weren't printed before).
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</p></div>
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</div>
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<div id="outline-container-1.2.3" class="outline-4">
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<h4 id="sec-1.2.3">1.2.3 R code that references other blocks </h4>
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<div id="text-1.2.3">
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<div id="R-3">
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<pre>
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> #+R_CODEREF: hidden_block
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> #+R_CODEREF: visible_block
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> a + b +c
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</pre>
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</div>
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</div>
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</div>
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</div>
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<div id="outline-container-1.3" class="outline-3">
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<h3 id="sec-1.3">1.3 Inline references to R data </h3>
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<div id="text-1.3">
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<p>We can evaluate R code inline.
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</p>
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</div>
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<div id="outline-container-1.3.1" class="outline-4">
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<h4 id="sec-1.3.1">1.3.1 Used in text </h4>
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<div id="text-1.3.1">
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<p>The value of <code>a</code> is 3.
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</p>
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</div>
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</div>
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<div id="outline-container-1.3.2" class="outline-4">
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<h4 id="sec-1.3.2">1.3.2 Used in a table </h4>
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<div id="text-1.3.2">
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<table border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
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<col align="left"></col><col align="left"></col><col align="left"></col><col align="left"></col>
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<thead>
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<tr><th>a</th><th>b</th><th>c</th><th>TOTAL</th></tr>
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</thead>
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<tbody>
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<tr><td>3</td><td>6</td><td>4</td><td>13</td></tr>
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</tbody>
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</table>
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</div>
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</div>
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</div>
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<div id="outline-container-1.4" class="outline-3">
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<h3 id="sec-1.4">1.4 Single-line R commands </h3>
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<div id="text-1.4">
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<p>If we want a line of R code to be evaluated but not printed,
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there's a convenient shorthand. This only works for single lines
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of R code, but you can have more than one in a row.
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</p>
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</div>
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</div>
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<div id="outline-container-1.5" class="outline-3">
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<h3 id="sec-1.5">1.5 Graphics </h3>
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<div id="text-1.5">
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<p>We use values defined elsewhere in the buffer to produce this
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graph. The new CAPTION and LABEL arguments work just fine.
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</p>
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<div id="R-4">
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<pre>
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> print(xyplot(speed ~ dist, cars,
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> panel = function (x, y, ...) {
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> panel.xyplot(x, y, ...)
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> panel.abline(h=a)
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> panel.abline(v=b)
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> }))
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</pre>
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</div>
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<p>
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<a href="e.eps">file:e.eps</a>
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</p></div>
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</div>
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</div>
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<div id="postamble"><p class="author"> Author: Eric Schulte
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<a href="mailto:schulte.eric@gmail.com"><schulte.eric@gmail.com></a>
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</p>
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<p class="date"> Date: 2009-02-05 15:41:29 PST</p>
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<p>HTML generated by org-mode 6.20f in emacs 23</p>
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</div></body>
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</html>
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