fe75562a64
org-babel-comint is basically working
2009-06-03 20:51:36 -07:00
e1aeec8ab1
begun implementing org-babel-comint
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a collection of functions to simplify interaction with comint-mode
buffers
2009-06-03 20:18:18 -07:00
c175d3ce0d
playing with org-babel-script and comint buffers/functions
2009-06-03 17:37:50 -07:00
2a663b9e09
R is now using last output (with default session) and passing all tests
2009-06-03 15:59:27 -07:00
49db1e523c
Merge branch 'master' into session
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Conflicts:
org-babel.org
2009-06-03 15:30:10 -07:00
39f7174884
Revert "Revert "Make org table result have header row and hline when appropriate...""
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This reverts commit dff01091dc
2009-06-03 15:26:32 -07:00
b1c103890c
*even more* discussion of session implementation issues
2009-06-03 15:23:45 -07:00
8ac2a7daa6
Added another multilingual example. One issue is that spaces in the string cause vector output.
2009-06-03 12:33:58 -04:00
02b265b2e3
Reverted tentative and hackish support for hline in R output. I have left a commented line and an unused function while I am thinking about this, and pending me learning git better. However I haven't yet reverted the ability of R to recognise hlines in var references, so the grades example still works. All sbe tests are passed.
2009-06-03 12:09:52 -04:00
21d01aea91
Some notes on possible support for named fields / rows / columns in org-babel and supported languages. These are just preliminary and don't outline a solution. My feeling is that this will require a bit more thought to avoid being an unrigorous hack.
2009-06-03 11:32:24 -04:00
bbf89dea08
fixed type in org-babel.org
2009-06-02 20:50:10 -07:00
dccbe633c9
discuss complication of mixing functional and imperative block evaluation
2009-06-02 20:34:20 -07:00
dff01091dc
Revert "Make org table result have header row and hline when appropriate..."
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This reverts commit e4263daf76
2009-06-02 16:29:30 -07:00
517253a2d0
beginning to add sessions
2009-06-02 16:28:56 -07:00
bba80bb837
working on sessions
2009-06-02 16:26:57 -07:00
f383f7e30c
added integration directory for org-tangle (from Eric N.'s into email)
2009-06-02 15:31:26 -07:00
0df550d84c
Minor updates and responses in the sessions planning subtree.
2009-06-02 16:45:31 -04:00
37758310e0
planning *session* task order, and separating "*Org Edit Src Example* buffer" tasks
2009-06-01 17:58:37 -07:00
fcd5e8f272
fleshing out the *sessions* discussion and TODOs
2009-06-01 17:28:34 -07:00
c38294d21f
DONE Remove protective commas from # comments before evaluating
2009-06-01 16:56:59 -07:00
8fef1f0509
More notes on sessions: need for header arg evaluation when we edit code, and need for removing protective commas
2009-06-01 15:14:35 -04:00
f03e3ed603
Further notes on org-babel session and ESS and *Org Edit Src Example* buffers.
2009-05-31 18:07:13 -04:00
ce96d45374
Added reminder/request that we bear ESS in mind when designing org-babel 'sessions'
2009-05-31 17:48:00 -04:00
e4263daf76
Make org table result have header row and hline when appropriate. (This should have been included with commit a39d68640e). The approach I've taken is to make R always write the column names into the tsv file. If the result does not have user-supplied column-names, then R writes default column names of the form V1,V2,...,V$numcols. After reading the tsv back into lisp, we check whether it has "real" column names or the R defaults. If it has real column names, then I give the org table an hline.
...
I expect this will conflict with Eric's work on sessions, but we can deal with that.
There is a remaining quoting issue that needs to be dealt
with. E.g. with an unquoted string in the input, it comes out as
quoted in the result. This seems bad, since if you use the output as
new input you get something different (with extra
quoting). (non-idempotence if that's the right term).
| col1 | col2 | col3 |
|------+---------+------|
| 1 | 2 | 3 |
| 4 | schulte | 6 |
tabel
| "col1" | "col2" | "col3" |
|--------+-----------+--------|
| 1 | 2 | 3 |
| 4 | "schulte" | 6 |
2009-05-30 16:45:26 -04:00
eb29bef93f
Made org-babel-remove-result interactive. Eric if you agree do you want to decide on a binding?
2009-05-30 15:59:46 -04:00
e7f860cb19
Altered the python code in the chained references example. AIui the example was producing the correct answer (ruby class Array) but for the wrong reason (python was returning None)
2009-05-30 15:01:55 -04:00
a39d68640e
Allowing org-tables with hline to be referred to and passed into R. If hline is present, the first row of the table becomes the column names in R. This allows the grades example to run for me which was not true before. Eric: any commits I make should be viewed as tentative -- feel free to reject or recode them.
2009-05-30 15:00:06 -04:00
2ca59eaa0f
Preventing end of buffer error when no newline after #+end_src
2009-05-29 23:34:50 -04:00
f87a673c9c
replacing parts of org-babel lost in a merge
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namely some extended discussion of environments and sessions under
the "Create objects in top level (global) environment in R?" header
2009-05-29 18:01:38 -07:00
d49084b73d
small additions to org-babel-comint.el
2009-05-29 17:45:40 -07:00
2fe76cd094
adding discussion to PROPOSED conversion between org-babel and noweb (e.g. .Rnw) format
2009-05-29 17:45:25 -07:00
986fcb4652
DONE pass multiple reference arguments into R
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This should be working, see the following example...
n + m
: 10
2009-05-29 16:45:03 -07:00
8967366a3b
back to the working version
2009-05-29 16:44:33 -07:00
fe22667f78
proposed org-babel <-> noweb interconversions
2009-05-29 16:22:09 -04:00
8deae3517b
Trying to resolve conflict while understanding very little about git
2009-05-29 16:21:12 -04:00
2adb00f678
proposed org-babel <-> noweb interconversions
2009-05-29 16:17:03 -04:00
e8e24c024b
added TODO fully purge org-babel-R of direct comint interaction
2009-05-27 19:01:29 -07:00
c5a58ad6aa
moving generalized comint functions to new file org-babel-comint.el
2009-05-27 19:00:13 -07:00
a54c27ec91
attempts at improving sb snippet
2009-05-27 18:42:15 -07:00
aca19b2efc
added my session thoughts for global variables
2009-05-27 16:40:47 -07:00
906c524234
Merge branch 'master' of git@github.com:eschulte/org-babel
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Conflicts:
org-babel.org
2009-05-27 16:40:26 -07:00
2c3c91ed12
removed org-babel-ui (tabbing blocks) as the functionality will be included in org-mode core
2009-05-27 16:34:48 -07:00
2d1a5405d1
added task for improving the sb snippet
2009-05-27 16:33:22 -07:00
5db027b3e1
Noted in hline TODO that plotting histogram in the grades example is blocked by not being able to deal with hline in the input table. (AIUI)
2009-05-26 19:40:47 -04:00
57783f9ce2
A few new TODOS: deal with hlines in tables, how do we pass multiple args in R, and some extended wittering about scoping issues in R: basically I want to argue for not abandoning the Sweave-style mode where objects created in code blocks are persisten across different blocks.
2009-05-26 19:16:46 -04:00
db9f189649
fixed bug: DONE R-code broke on "org-babel" rename
2009-05-25 19:23:30 -07:00
aec7ec05d3
more fleshing out of the introduction
2009-05-25 18:20:32 -07:00
b5174f5a7d
misc changes
2009-05-25 15:13:56 -07:00
8d271e1e92
changed README
2009-05-25 14:52:42 -07:00
02634f7d85
tweaked grades example (need some R help in plotting histogram)
2009-05-24 15:47:21 -07:00
Eric Schulte
Dan Davison